Submitted SNP(ss) Details: ss1328459

Submitted SNP(ss) Details: ss1328459

Submitter
Handle	TSC-CSHL
Submitter SNP ID	TSC0171863
RefSNP(rs#)	rs897631
Submitted Batch ID	TSC-SANGER-19-26-000905-RESUBMISSION
Submitted Date	Sep 06, 2000
Publication Cited	N.D.
First entry to dbSNP	Sep 6 2000 12:00:00:000AM

Resource Links
GenBank Accession	AC020709.3
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	TSC-SANGER-19-26
Ascertainment Samplesize	10
Population	N.D.

Allele
Observed Allele	C/T
Ancestral Allele
Allele Origin	N/A
SNP Class	SNV
CpG Code	nonCpG

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	population count: 2
Genotype Summary	population count: 4
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 TACCACCAGG GCCCATGTGC GCCTACCTGG GGCCCGGCTC ACAGACCAGC ACGTGGTTCT
 GGCCTGAAAA TCCG
 Y
 CTTAGCAAGT CCTGGCGCCA ACTGGGGCCT CCGAGCCTGG GCCCTGCCGG ATCCTGGCTT
 TGTCCAGAAG AGGGTTTTGC CACTGTCAGG GGACCTTGGC GTGCCATATG CTCCGGCCCC
 TGGAAGTCAA GGCTCAGGTC GTGGAGTTAG GTTGAGCTTG GGGATTTTCC AGGTCAGAGA
 ACCTGGGGCA GGTGGGGCTC TACTCACCCA CCCAGCTCTG GCTTCCAAGG GGAAGCTCAG
 AGAGGAGTTT CCTGATCACG CCCTTTGAGC TCCATAGAGC CGGGTGTGAC ACTGGCTAGG
 ATATGCGGAC CCCTGTGACT TGAT

Submitted Frequency for ss1328459

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Estimated Heterozygosity +/-std.err.	Genotype Freq.	Submitted Hetero- zygosity	Submission Batch	Submitter
WICGR1_caucasian - NORTH AMERICA	182	T=0.80000001	C=0.20000000	0.320 +/-0.050			TSC-WICGR-WICGR1_caucasian-Sep-21-2003-ALLELE_FREQUENCY	TSC-CSHL
WICGR5_nigerian - WEST AFRICA	182	C=0.54000002	T=0.46000001	0.497 +/-0.008			TSC-WICGR-WICGR5_nigerian-Sep-21-2003-ALLELE_FREQUENCY	TSC-CSHL

dbSNP summary of Genotypes for ss1328459

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
WICGR1_caucasian - NORTH AMERICA	94	94	T=0.79787236	C=0.20212767	T/T=0.63829786 C/T=0.31914893 C/C=0.04255319	Pr(chiSq=0.005,df=1) =1.000	Genotype Freq.
WICGR3_african_american - NORTH AMERICA	50	50	T=0.63999999	C=0.36000001	T/T=0.51999998 C/C=0.23999999 C/T=0.23999999	Pr(chiSq=5.740,df=1) =0.020	Genotype Freq.
WICGR4_asian - EAST ASIA	48	48	T=0.62500000	C=0.37500000	T/T=0.45833334 C/T=0.33333334 C/C=0.20833333	Pr(chiSq=2.003,df=1) =0.200	Genotype Freq.
WICGR5_nigerian - WEST AFRICA	130	130	C=0.53846157	T=0.46153846	C/T=0.46153846 C/C=0.30769232 T/T=0.23076923	Pr(chiSq=0.332,df=1) =0.584	Genotype Freq.

Submitted individual genotype for ss1328459

There is no individual genotype data for ss1328459.

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