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Submitted SNP(ss) Details: ss13307181           
Submitter
HandleSC_SNP
Submitter SNP IDNT_009799.12_6013200
RefSNP(rs#)rs1130941
Submitted Batch IDCHR13_NA17119
Submitted DateOct 22, 2003
Publication Cited[1] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPOct 22 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHR13_NA17119
Ascertainment Samplesize4
PopulationN.D.
Allele
Observed AlleleT/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:Chr_13_17119_2-558g07.p1kposition:457quality:56sequence:S13_3-68j21.p1kposition:272quality:51sequence:Chr_13_17119_2-102l19.p1kposition:-198quality:51

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss13307181|allelePos=430|len=580|taxid=9606|alleles='T/A'|mol=Genomic
 CTCAGTGGTA AACATCATTT ACATGATAAT CACTGACTat tgtgaaacag gtcttttgga
 atgaagggga gaggaaaagt agtgagttag gtgggtggag ggggcaagag ctacacgtcc
 aacttccaaa acaggaagtc aaaagataat ttctgaaaca ggcgaaatca agaaaaagca
 ttaaaaatta atatttaaaa attggaggca aaatcaaaga aacagctcaa atagtccaaa
 tgattcactg tctctggaaa ctggtctggg gagaatcagg ggcaggagta gtgcttcttg
 ttagaagttt tgtcagcatt atttcacttt tcaaccacgt gcatacattg ctttgataag
 ataaaaGTAG TGTTAAAATA ACAGCTCTTA AGAAATCAAA GATGCACTAA CCTTTTGTTT
 CAGTTCATG
 W
 GTATCACTGA AAATGAATTC AATCACATAC GGCATCTCAA TAGACATAGT CAAAGAGAAG
 CTAGCAAAAA TGAAGAGAAA GTTGTCTTAG TCTACGATCT TAAATTTCTA TCTGAAATTA
 TTTCAAACAA TTCTAAATGG AAATTTAAAC

  Submitted Frequency for ss13307181 back to top
There is no frequency submission for ss13307181.


  dbSNP summary of Genotypes for ss13307181 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU116116T=0.91379309
A=0.08620690T/T=0.82758623
A/T=0.17241380
Pr(chiSq=0.085,df=1)
=1.000
Genotype
Freq.
HapMap-HCB
EAST ASIA
8888T=0.98863637
A=0.01136364T/T=0.97727275
A/T=0.02272727
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.
HapMap-YRI118118T=0.88135594
A=0.11864407T/T=0.76271188
A/T=0.23728813
Pr(chiSq=0.239,df=1)
=0.655
Genotype
Freq.

  Submitted individual genotype for ss13307181 back to top
There is no individual genotype data for ss13307181.