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Submitted SNP(ss) Details: ss13386187           
Submitter
HandleSC_SNP
Submitter SNP IDNT_011520.9_17866380
RefSNP(rs#)rs84473
Submitted Batch IDCHR9_12_NA07340_2b
Submitted DateNov 17, 2003
Publication Cited[1] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPOct 23 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodCHR9_12_NA07340
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleT/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec/t_g
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:912S-956f08.p1kposition:-539quality:56

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss13386187|allelePos=2000|len=3686|taxid=9606|alleles='T/C'|mol=Genomic
 aaaatctcat agtcctatat ttgttaaaga aatcgaatcc atgttttaaa agcttcccac
 aaataaactc cagggtcaca tggttttacc catgaattct tccaaacatt taagaaagaa
 agaatacAGG CTAGACATgt gactcatgcc tgtaatccca gcactttggg aggctgaggt
 gggaggattg tttgagccca ggagttcaag accagcctgg gtaacttgat gagaccgtgt
 ctctacaaaa aatttttaaa attagccagg tatggtggtg cgtgcctgta gtcctggcta
 ctcaggaggc tgaggcagga ggatcacttg agcctgggaa gttgaggctg cagtgagcca
 tgatcatgcc actgaagttt ggcctgggtg agagagagaT AGATGAaagg aaggaaggaa
 ggaaggaagg aaggaaggaa ggaGATCTTC AACAATTTTT AGAAAATAGG AGAAAGAAGG
 AATGCTTCTC AAAGCTTTAA GATAGAGAAG GACTTCCTTA AACAAGACAC AAAAAGTACA
 CCGTAAAGAA GATGAACAAA TTTGACTTCA TTAAAACTAA GAACTCATGT TTATCAATAG
 ATACCATTAA AAGAATAAAA AGGCAAAACA CCGTGTGTGC AGCTGAACAC GTATCACTGA
 CAAAAGGTGT GTATTTGGAC TGCACATGTA CCaaaaaact cctcctaaaa ctctgtaaga
 aaaagataaa caactttatt ttttaaatag tcaagagaat tgagctgata cttcactgaa
 gaggatatcc aaatggttaa tcactgtatc aaaaagtgct caacttcatt tgcaatcagg
 caaatgcaaa ataaaaccac aataacatac tactagacac ccgacagaat gactaaaatt
 ttaaaacctg acagtaccaa gtaacagaag atatgaagta acagaaagtg ccatttactg
 ctgcttggaa aacagacggg cggtattatt tactaacgtt gaagacaagt tatggcccat
 aatgcagcca gttcacttct aggtatgtct accagaaatg tatgcatgta tgcaccaaaa
 aaactagaaa taacccaaat tttcatcagt agtagaatga gtaactgtga tatagtagac
 aatggaattc tattgcaatg aaaatgacag acagctgcac acaaaacgta tcaatctcgc
 caacaaaatg ctaacaaaga agccagatag aaaagCCTTT ATCTTggccg ggggcggtgg
 ctcacgcctg taatcccagc actttgggag gctgaggcag gtggatcacg aggtcaggag
 atcaagacca tcctggctaa cacggtgaaa cctcgtctct actaaaatac aaaaaattag
 ccgggcgtgg tggcgggcac ctgtagtccc agctactcag gaggctgagg caggagaatg
 gcgtgaaccc aggaggcaga gcttgcagta agcagagatt gcgccaccgc actccaacct
 gggcaacaca gtgagactcc atctcaaaaa aaaaaaGCCT TTATCAtaaa aggcaagtta
 ttggttaccc ttctttggga agaggggaca aaaggagggc ttctggggtg ctgtaatgtc
 ctatctctag attcgagtgg tggttacaca ggtgtttgtg ataaatcact gagctgtata
 tcattttctc tatatgtgtt atattttgct atttttgaaa agtttaaaGA GAGAAAACAG
 GAGGAGAAGA ATGAAGAcag tggaatataa gcagtctctg gaggaaaaag tagagtcaag
 aaataatttt tttttaaaga aaaaaataac ccattgtata gcgatggaaa ATAACTTAGG
 tcaggacatt ataacagaaa actacagact gggaggctta aacaaccttt atttctcaca
 gttctagagg ctaggaagtc tatgatcaag gtgctggctg atagagttcc tgatgagggt
 tcacttcctg gtttgcaga
 Y
 ggctatcttc tcgttgtgcc ctcacatggc agagacagat catctctttc ttgcctcttc
 gtctaagggc actaatccca ttcatgaggg ctccatcctc atgacctaat cacccccata
 gtgctctacc tcctaatacc atcacacgag ggattggggc ttcaacatat gatttcgggg
 ggatactttc aatccatagc aAAAAATATA TAGTAGAAAA GGGGAAAGTG TTATGTAGGA
 AAGAGGGGAG ATAATTGTTC AAATGGTGTC AAGAAGTAGA TGACAggaga tgatggcctt
 gaatgggggg accaccctca gctaaacaca tcggtgctga caacagggaa tgtggagtag
 gcggggacag aggtgtgtgc atggggtaga gggaattctc ctctggctat ttctattttc
 tcagcgagac agcagcaggg ctatcagctg agagtaagcg tggaggggaa ggggctgcag
 gctgagggga gggaaggagg catgccttct gggagagggg tgaacagaga aatgcagaaa
 gacgtcaaac cacatcatag gctcactgtg gctcatgtcg tgatttcaaa gtgagagcaa
 tagggccggg cagggtggtt catgcctgta atcccagcac tttgggaggc caaggcaggc
 atatcacctg aggtcaggag ttcaagacca gcctggccac catggcaaaa ccctgtctgt
 actaaaaaaa atacaaaaat tagccgggtg tggtggcggg tgcctataat accagctact
 caggaggctg aggcagagag aactgcttga accccggagg tggaggttgc agtgagctga
 gagtgtgcca ctgcactcca gcctgggcaa cagagcgaga ctctgtgtca aaaaaaaaaa
 aaagaaaaaa aaaaaaaaag aaagtgagag cagtcagcaa aaaggtatgt tcccctagcc
 atggtggaga actgaaacca agcagttctg gggtggtgat gccaggatga cgaagagaga
 gagaagcaag gaggcaggaa gtataggtga aggagtgaca atgacaggcc atggagtcca
 tgctgggtac aaagcaaggc acatgaacgg gatggggctg ggaaaagcgg ccaggagcaa
 ttccctgtca atggggaaaa gcactgtgtg ggtggaggac tagagggaat gaactggaaa
 gacagaaggc agagactgga aagtggggtg cttgaaactt gtatttacgg gagagctgct
 gtcactggcg atgataaagg ccagcgcgtg gtcatgtgaa tgTGGAGGGT CAGGAACCAG
 AGGCAACGCT GAGTCAGGGG CTCACATCTT TGAGGATGTG GGGGAGCACC CCAGGCTCGT
 AGATACCTAT CACCGGGGTG ACAGCAAGTG GTATTGTAGG GTGACAGAAG ATTCAAGGCT
 Gggggcaagg aggaccctac cccacctcca ggcccagtgg gagagggact gggagagaaa
 actctcagga ggctgcgggg caagcgggtc cttcaaggag agccaggtgt gggttacagt
 gaggaggcaa aggggagatt cagggagaag gctgaggctc tggaggaCAC ACGGGGGTGT
 GTCTCTTCCC TCCCTTCTAG AACCCCAGGC TGAAGCCACC TGGCCTCCAC TCAGAAGCCT
 CTGCTG

  Submitted Frequency for ss13386187 back to top
There is no frequency submission for ss13386187.


  dbSNP summary of Genotypes for ss13386187 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
HapMap-CEU120120C=0.50833333
T=0.49166667C/T=0.51666665
C/C=0.25000000
T/T=0.23333333
Pr(chiSq=0.068,df=1)
=1.000		Genotype
Freq.
HapMap-HCB
- EAST ASIA 		9090T=0.63333333
C=0.36666667C/T=0.46666667
T/T=0.40000001
C/C=0.13333334
Pr(chiSq=0.001,df=1)
=1.000		Genotype
Freq.
HapMap-JPT8888T=0.71590906
C=0.28409091T/T=0.52272725
C/T=0.38636363
C/C=0.09090909
Pr(chiSq=0.111,df=1)
=0.752		Genotype
Freq.
HapMap-YRI120120C=0.70833331
T=0.29166666C/T=0.48333332
C/C=0.46666667
T/T=0.05000000
Pr(chiSq=1.729,df=1)
=0.200		Genotype
Freq.

  Submitted individual genotype for ss13386187 back to top
There is no individual genotype data for ss13386187.

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