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Submitted SNP(ss) Details: ss13405692           
Submitter
HandleSC_SNP
Submitter SNP IDNT_004487.15_12431389
RefSNP(rs#)rs9633306
Submitted Batch IDCHRX_NA11321.2
Submitted DateOct 23, 2003
Publication Cited[1] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPOct 23 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHRX_NA11321
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 14
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:XChr_X_11321_2-553o18.p1kposition:-413quality:46

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss13405692|allelePos=2000|len=4000|taxid=9606|alleles='C/T'|mol=Genomic
 atttaaagtg ggtttctttt aaacaacata tagccaggtt ttgttttttt agatcattct
 ggcaatctgt cttttcattg atgtatttag atcattgatt tattttttat ttatttattt
 ttttgagacg gagttttgct cttgttgcct aggctggagt gcaatggcgc gatctcggct
 caccgcaacc tctgcctcct aggttcaagc gattctctag cctcagcctc ctgagtagct
 gggattacag gcatgtgcca ccatgcctgg ctaatttttt gtatttttag tagagacggg
 gtttcttcat ggtggtcagg cgtgtctcta actcccaacc tcaggtgatc tgccctcctt
 ggcctcccaa agtgctggga ttacaggtgt gagccattgc gcccagccag atcattgatg
 tttaaagaaa ttattggtat ttggattaat atctacctta tttaatactg ttttttattt
 gttgctctta ttctttgttt ctatttttgc cttccacact ttttcaacct tttatatttt
 ttattgagca atctgtatga ttgtattttt ctgtcctttc ttagcacatc agttctactt
 ctttttaaac atttttcagt gattgtctta gagtttgtaa tattcattta taactaatct
 aagtacactt tcaaataaca ctatacggct tcaggtagta caagtactat ataataacaa
 aatatttcta ctctctcatc ttttgtatca ttgctgtgat ttattttact tacatgctta
 tatatatgtg tgtgtgtgtg tgtgtgtgtc tgtgtgtaat taaatgcatt gttgctaata
 tccttttaaa cagtcatctg ttagatcaat tacgaataaa aaaataaaag tttttatttt
 accctttacg tattcattct caaatgctct tcctttcttt atataaatcc aagtttctga
 gctatatcat tttcattctc tttgaagaac ttttaaaaat attacttgca ggtcaggctt
 actgacaaca aattctctca atttttgcct gtctgaggaa gtatttctct ttcacttctg
 aacgttaatt tcacagggtg tggaattcta ggttgatgag tttttttcta tcaacacttt
 aaattttttc ttccactctc ttcttgcttg cattgttttt gagaaatcat gtgtaatttt
 tatctttact tctgtgttca taaggtgttt aatgatttat ttttaattta atttaattta
 attttttaag agatagtgtc tccctatatt gcccaggctt gtctggaact cctggcctca
 agcaattcta ccacctcagc ctcccaaagt gttcagatta caggcatgag ccatgagcca
 ccacacctgg ctgcgatttt ttctttatgt ttaatttttt gaaatttgaa tatctatgcc
 taagcatagt tttttttgtt ttctttttgt tttgcattta tcttgcttgg tgttctctga
 gcttcctaga tctgtggatt ggtgtctaac attaatttgg gggaaatttt cactcattat
 tgcttcaaat attgcttctg ctcttttctc tttttcctct cctgggattt ccattacata
 tgtttacacc ctttgtagtt gtcccccagc ttttggatat tctgttatga gtttttattt
 tcagtctgtt ttctttttgc ttttggtatt ggactttctt ttcttttttt ttttttttga
 gatggagtct cactctgtcg ccaggctgga gtgcagtggc agtggtgcaa tcttggctca
 ctgcaacctc cgcctcccgg gttcaagtga ttctcctgcc tcagtctccc aagtagctgg
 gattacaggc atgtgccacc atgcccggct aattttttgt atttttagta gagatggggt
 ttcaccatgt tggccaggat ggtctcaatc tcatgacctc gtgatccacc tgccttggcc
 tcccaaagtg ctgggatta
 Y
 atggacattt ttattgttat gtccccaagc ttggagattc tttcttcatc atgtccagtc
 tactaatggg ttcatcaaag gcattctttg tttctcttac actatatttt tttgtaatct
 ctgtgatttc ttttttgctt ttagaatttt catgtttctg tttacattat atacctgttc
 ttgcatgcta tctacttttt ccattaaagt ccttagcata gtccatagtc catagaagca
 ttaaatttct ggtctggtaa ttctagcgtt tctaccatat gcgattctgt ccagatatgc
 ttgttcagtc tcttcagatc tttaaactgt gttttttgtc ttttagtttg ccttataatt
 tttggttaaa aggtacacat gatgtactgg gtaaaaagaa ctgcagtaaa taggccttta
 gtaatgtagt ggtaaggtgt aggaagaagg ggaagtgtat tagttcattt tcatactgct
 atgaagaaat acctgagact gcgtaattta taaataaaaa gaggtttaat gcactcacaa
 ttccacatgg ctggggaggc ctcacaatca tggcagaagg tgaaggagaa acaaaggcac
 atcttacatg gcagcaggca agagagaagt ggcgagaaaa agggggaaaa accccttata
 aaatcatcag atctcatgag aactcactca ctgtcatgag aacagcagca tgggggtaac
 cacccctatg attcaagtac ctctcaccgg gtccctctta tgacgtaggg attatgggag
 ctacaattca aggtgagatt tgggtgggga cacagccaaa ccatatcagg gagcattctg
 tggtcttatg agtaggtctc agtcttttgg tgagcttatg cccctgaatt gtgaacttca
 tcactgtttc tctgtcccta tctctctcca tctccccact cccactccca cactttacat
 gggaaggaat gacttagaag gggttggaat tgggtatttc ttttcttcca tgtggaaagc
 tagagggagc tgggttggct atttcccttt ccccagcttg atcaggctct gatcaaaccc
 cagtaggctc tggtaaaata gtttcttctg aggccaggct ttcttaagaa cagaatgctc
 tggcacattt caaaattggt tttattttgt gtccccctgc tggaatcata agggaatttt
 tctctgatat ttgctgtcag gtagagctcc tggatgtaaa acgcataaaa gtgtggaagc
 ccccatatga ctgggtctct ctggagtttt aaacttacag ttgtcttcac tgagcctcta
 gcaatccatt aattacagtt caggttttcc tatcctagca cttgttcctg tggaggtttt
 tgcctgggag tttatgttct gataagttgt gattctcagt atctgcctgt ctctctgata
 tttggggcag tggtttgtcc tataactcta cttttctgat ggttctaaga agagttgttg
 atttttcagt ctgttccagt ttttacgtga tgttaggatg gagtagcaac ttccaagctc
 cttacatgct gaaccagttt attccttttt aatgctgaat aatattccat cgtatggata
 tactacaatt tgtttattca tctgttggtg gacatttgaa ttgtttctag tgttgggcta
 tCgtattagt ccattttcat acttctgtaa gaactgccca agactggtaa tttataaagg
 aaagaggttt aattgactct cagttctgca tggctgggga gacttcagga aatttatgat
 tatggcagaa gaggaagggg aagcaaggta ccttcttcac aaggtggctg gaaggagaag
 tgctgagtga aggaggaaga gccccttata aaaccatcag atcttgtgag aattcaccca
 ctatcatgag aacagcatgg gcaaaactgc ccccatgatt cagttacctc cacctggtct
 ctcccttgac atgtagaaat

  Submitted Frequency for ss13405692 back to top
There is no frequency submission for ss13405692.


  dbSNP summary of Genotypes for ss13405692 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU226226C=0.96017700
T=0.03982301C/C=0.92920351
C/T=0.06194690
T/T=0.00884956
Pr(chiSq=4.078,df=1)
=0.050
Genotype
Freq.
HapMap-HCB
EAST ASIA
8686C=0.89534885
T=0.10465116C/C=0.79069769
C/T=0.20930232
Pr(chiSq=0.117,df=1)
=0.752
Genotype
Freq.
HapMap-JPT172172C=0.98837209
T=0.01162791C/C=0.97674417
C/T=0.02325581
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.
HapMap-YRI226226C=0.77876109
T=0.22123894C/C=0.59292036
C/T=0.37168142
T/T=0.03539823
Pr(chiSq=0.699,df=1)
=0.439
Genotype
Freq.
HAPMAP-ASW9898C=0.87755102
T=0.12244898C/C=0.75510204
C/T=0.24489796
Pr(chiSq=0.219,df=1)
=0.655
Genotype
Freq.
HAPMAP-CHB8282C=0.95121950
T=0.04878049C/C=0.92682928
C/T=0.04878049
T/T=0.02439024
Pr(chiSq=9.226,df=1)
=0.003
Genotype
Freq.
HAPMAP-CHD170170C=0.91764706
T=0.08235294C/C=0.83529413
C/T=0.16470589
Pr(chiSq=0.108,df=1)
=0.752
Genotype
Freq.
HAPMAP-GIH176176C=0.93750000
T=0.06250000C/C=0.87500000
C/T=0.12500000
Pr(chiSq=0.047,df=1)
=1.000
Genotype
Freq.
HAPMAP-LWK180180C=0.85000002
T=0.15000001C/C=0.73333335
C/T=0.23333333
T/T=0.03333334
Pr(chiSq=0.650,df=1)
=0.439
Genotype
Freq.
HAPMAP-MEX100100C=0.97000003
T=0.03000000C/C=0.94000000
C/T=0.06000000
Pr(chiSq=0.003,df=1)
=1.000
Genotype
Freq.
HAPMAP-MKK286286C=0.88461536
T=0.11538462C/C=0.78321677
C/T=0.20279720
T/T=0.01398601
Pr(chiSq=0.006,df=1)
=1.000
Genotype
Freq.
HAPMAP-TSI176176C=0.97727275
T=0.02272727C/C=0.95454544
C/T=0.04545455
Pr(chiSq=0.002,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss13405692 back to top
There is no individual genotype data for ss13405692.

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