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Submitted SNP(ss) Details: ss1343940           
Submitter
HandleTSC-CSHL
Submitter SNP IDTSC0191333
RefSNP(rs#)rs9614
Submitted Batch IDTSC-SANGER-19-26-000905-RESUBMISSION
Submitted DateSep 06, 2000
Publication CitedN.D.
First entry to dbSNPSep 6 2000 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodTSC-SANGER-19-26
Ascertainment Samplesize10
PopulationN.D.
Allele
Observed AlleleA/C
Ancestral Allele
Allele OriginN/A
SNP ClassSNV
CpG Codec/!t_g
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 14
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss1343940|allelePos=321|len=537|taxid=9606|alleles='A/C'|mol=Genomic
 CCAGCCCGAG GAGGCAAGCC Cggaggagca gccagaggag gcgagtgctg aggaggagcg
 gccggaggac cagcaggagg aggaggcggc ggCCGCCGCC GCGTACCTGG ACGAGCTGCC
 CGAGCCGCTG CTGCTGCGCG TGCTGGCCGC ACTGCCGGCC GCCGAGCTGG TGCAGGCCTG
 CCGCCTGGTG TGCCTGCGCT GGAAGGAGCT GGTGGACGGC GCCCCGCTGT GGCTGCTCAA
 GTGCCAGCAG GAGGGGCTGG TGCCCGAGGG CGGCGTGGAG GAGGAGCGCG ACCACTGGCA
 GCAGTTCTAC TTCCTGAGCA
 M
 GCGGCGCCGC AACCTTCTGC GTAACCCGTG TGGGGAAGGT GAGAGGCCCT CGCTGGGCGA
 GCTCAGCTTC CCCTGCTGCG AAATGGGCCG AAACGGCGCC GCCTGGCTTT GAGGGAGAAA
 TGGGATTAAG CGCCTGGCTC AGTGCCAGCA CTGGGTAGCC CCAAGGCTGT CTATTACTGT
 AGCTCTCTGG CCACCTGTGC CCTGGGGTCT CCCGGG

  Submitted Frequency for ss1343940 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
CEPH
MULTI-NATIONAL
184A=0.81000000
C=0.19000000
0.308 +/-0.0511_2004SEQUENOM


  dbSNP summary of Genotypes for ss1343940 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU226226A=0.84513277
C=0.15486726A/A=0.73451328
A/C=0.22123894
C/C=0.04424779
Pr(chiSq=2.709,df=1)
=0.150
Genotype
Freq.
HapMap-HCB
EAST ASIA
8686C=0.50000000A/C=0.58139533
A/A=0.20930232
C/C=0.20930232
Pr(chiSq=1.140,df=1)
=0.294
Genotype
Freq.
HapMap-JPT172172A=0.58139533
C=0.41860464A/C=0.53488374
A/A=0.31395349
C/C=0.15116279
Pr(chiSq=0.841,df=1)
=0.371
Genotype
Freq.
HapMap-YRI226226A=0.84070796
C=0.15929204A/A=0.70796460
A/C=0.26548672
C/C=0.02654867
Pr(chiSq=0.009,df=1)
=1.000
Genotype
Freq.
HAPMAP-ASW9898A=0.79591835
C=0.20408164A/A=0.61224490
A/C=0.36734694
C/C=0.02040816
Pr(chiSq=0.838,df=1)
=0.371
Genotype
Freq.
HAPMAP-CHB8282C=0.56097561
A=0.43902439A/C=0.58536583
C/C=0.26829270
A/A=0.14634146
Pr(chiSq=1.455,df=1)
=0.251
Genotype
Freq.
HAPMAP-CHD170170C=0.50000000A/C=0.57647061
A/A=0.21176471
C/C=0.21176471
Pr(chiSq=1.988,df=1)
=0.200
Genotype
Freq.
HAPMAP-GIH176176A=0.76704544
C=0.23295455A/A=0.61363637
A/C=0.30681819
C/C=0.07954545
Pr(chiSq=1.761,df=1)
=0.200
Genotype
Freq.
HAPMAP-LWK180180A=0.89999998
C=0.10000000A/A=0.80000001
A/C=0.20000000
Pr(chiSq=0.211,df=1)
=0.655
Genotype
Freq.
HAPMAP-MEX100100A=0.80000001
C=0.20000000A/A=0.62000000
A/C=0.36000001
C/C=0.02000000
Pr(chiSq=0.781,df=1)
=0.403
Genotype
Freq.
HAPMAP-MKK286286A=0.87062937
C=0.12937063A/A=0.75524473
A/C=0.23076923
C/C=0.01398601
Pr(chiSq=0.085,df=1)
=1.000
Genotype
Freq.
HAPMAP-TSI176176A=0.81250000
C=0.18750000A/A=0.64772725
A/C=0.32954547
C/C=0.02272727
Pr(chiSq=0.586,df=1)
=0.479
Genotype
Freq.

  Submitted individual genotype for ss1343940 back to top
There is no individual genotype data for ss1343940.