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Submitted SNP(ss) Details: ss13504714           
Submitter
HandleSC_JCM
Submitter SNP IDchr1.NT_026943.13_8662120
RefSNP(rs#)rs4403648
Submitted Batch IDTSC_200310
Submitted DateOct 31, 2003
Publication Cited[1] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPOct 31 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodTSC_200310
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleA/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 12
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence position qualityjah42b11.b1 -384 35

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss13504714|allelePos=501|len=1001|taxid=9606|alleles='A/C'|mol=Genomic
 AGTGTTTGCC AAAAGAGACC AATTTACTTA TTAAAtagaa tgaccataca ttacagtttc
 ctggaatgaa gcacttttat aactattgtc ctgatggcca atccagttta gcattttgtc
 cttgattgct ttacctttta acaaactatt attatcaatg ttatgattat tgttatcatt
 aatgaaaata agccagatgg acttttacaa cctctacttc atactcccaa tctttgttat
 aatcatgtct aagtagcatg agacaaatcc agggaatgca gttctcacct taaatgggag
 ttaatcttaa agaagaccag cagtaataac ctatctcttc ccatttcaga ctcaacataa
 ccaatacctg cctttcaagg aaaactcata tggggctcac tgatgaaaca aagcgagttt
 gcaaaaaaag attcgacata gtcaattctt tgtactcttc agtgatggta gCTGCCTTAG
 TGGAAAATGT GGAAAATTAC
 M
 GATTGGGGTA GGTGAattga agataaaatt atttattttt gttgttataa acacaaattt
 tgatataata tagcatcatg tgtaaaataa ttttcctaac taacttaaga aatatgtgga
 acagaaatat ttgaaatgtg gtggtgtaca aggaagtgag cttgaagaaa agagggtccc
 aaaaattcat gttttacacc aagagaaata aaaccatagt agtcacaatt tatgaatatt
 tttacacttg tatatatata CTTGTatatt tgtgtgtata tgtatttgca actgaattat
 aaactttaat gattaagctg atttgaaata attttaggaa atactttagt atggcaatac
 atacttggtc tttttgttgc ccataatcaa ttagatttga gaaataatta accattgaat
 aacctctttg caaatttact tagttatcct agcaaagtat taaatatttt gtaaatgagt
 cctcacattt ctgattgtat

  Submitted Frequency for ss13504714 back to top
There is no frequency submission for ss13504714.


  dbSNP summary of Genotypes for ss13504714 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU226226A=0.81858408
C=0.18141593A/A=0.66371679
A/C=0.30973452
C/C=0.02654867
Pr(chiSq=0.207,df=1)
=0.655
Genotype
Freq.
HapMap-HCB
EAST ASIA
8686A=0.90697676
C=0.09302326A/A=0.81395346
A/C=0.18604651
Pr(chiSq=0.080,df=1)
=1.000
Genotype
Freq.
HapMap-JPT172172A=0.95348835
C=0.04651163A/A=0.91860467
A/C=0.06976745
C/C=0.01162791
Pr(chiSq=3.917,df=1)
=0.050
Genotype
Freq.
HapMap-YRI226226A=0.87610620
C=0.12389380A/A=0.76991153
A/C=0.21238938
C/C=0.01769911
Pr(chiSq=0.053,df=1)
=1.000
Genotype
Freq.
HAPMAP-ASW9898A=0.89795917
C=0.10204082A/A=0.81632656
A/C=0.16326530
C/C=0.02040816
Pr(chiSq=0.583,df=1)
=0.479
Genotype
Freq.
HAPMAP-CHB8282A=0.89024389
C=0.10975610A/A=0.78048778
A/C=0.21951219
Pr(chiSq=0.129,df=1)
=0.752
Genotype
Freq.
HAPMAP-CHD170170A=0.92352939
C=0.07647059A/A=0.84705883
A/C=0.15294118
Pr(chiSq=0.086,df=1)
=1.000
Genotype
Freq.
HAPMAP-GIH174174A=0.85632181
C=0.14367816A/A=0.73563218
A/C=0.24137931
C/C=0.02298851
Pr(chiSq=0.032,df=1)
=1.000
Genotype
Freq.
HAPMAP-LWK180180A=0.89999998
C=0.10000000A/A=0.80000001
A/C=0.20000000
Pr(chiSq=0.211,df=1)
=0.655
Genotype
Freq.
HAPMAP-MEX100100A=0.94000000
C=0.06000000A/A=0.88000000
A/C=0.12000000
Pr(chiSq=0.024,df=1)
=1.000
Genotype
Freq.
HAPMAP-MKK286286A=0.94055945
C=0.05944056A/A=0.88111889
A/C=0.11888112
Pr(chiSq=0.066,df=1)
=1.000
Genotype
Freq.
HAPMAP-TSI176176A=0.73863637
C=0.26136363A/A=0.52272725
A/C=0.43181819
C/C=0.04545455
Pr(chiSq=1.234,df=1)
=0.273
Genotype
Freq.

  Submitted individual genotype for ss13504714 back to top
There is no individual genotype data for ss13504714.

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