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Submitted SNP(ss) Details: ss1358662           
Submitter
HandleTSC-CSHL
Submitter SNP IDTSC0236360
RefSNP(rs#)rs921987
Submitted Batch IDTSC-SANGER-19-26-000905-RESUBMISSION
Submitted DateSep 06, 2000
Publication CitedN.D.
First entry to dbSNPSep 6 2000 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodTSC-SANGER-19-26
Ascertainment Samplesize10
PopulationN.D.
Allele
Observed AlleleA/G
Ancestral Allele
Allele OriginN/A
SNP ClassSNV
CpG Codec_g/a
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 3
Genotype Summarypopulation count: 2
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss1358662|allelePos=137|len=615|taxid=9606|alleles='A/G'|mol=Genomic
 TGTCATTCAT TCCCTTGAAG AACAATGGGA ATCTTTGGGG GAAGAAAGTA TCATTATTAT
 TATTTTTAAT ATGTTATTTC TGTGATGgct ccttgcagag cagggctagc ctgtaagcaa
 tgcactgaga gtagcC
 R
 AGAGTGTCCT TAGTTGCCTA CTTGCTTTCT ACTTTCCAAA ATGTGGGCAG TGAAAGAACT
 GGGGTTAAGC GAGGTGCTGG AAAGGGTGCC TCTTCTGTCC TCTGTTCTAA CGCAGCAGTG
 CTAACAGATG TGAACACTGA GTATGGTTAA GGGCGGTTTG GGACTGGCAG CTCTTGTGTG
 TGTCATTGAT TGGTCTGATT GTCCCTCTAG GGGCAGCAGT ATCGCTCATT TGAACTGGCC
 AAAAATAGGG ACCCTGAGAA GGAAGGGAGC TCGGCTTTCC TGAGTGCCTT CGCCGTGCAC
 CCTGTCTCCG AAGGTACCCT CATGTACCGG CTCCACAAAC GCTTCAGCGC TCTGGAGTTG
 GAGCGGGCTT ACAGTGAAAT AGAACAACTG CAGGTGAGCT GAAGAGGAGC AGGTGGGCAG
 AGGACCGCAG TCAGAGGGTC AGAGAGAGCC TGAGATGTCC AGGCGTGCAA TGAACGAG

  Submitted Frequency for ss1358662 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
TSC_42_AA
- NORTH AMERICA 		78G=0.70999998
A=0.30000001
0.406 +/-0.057TSC-ORCHID-TSC_42_AA-Sep-21-2003-ALLELE_FREQUENCYTSC-CSHL
TSC_42_A
- EAST ASIA 		72A=0.67000002
G=0.33000001
0.442 +/-0.053TSC-ORCHID-TSC_42_A-Sep-21-2003-ALLELE_FREQUENCYTSC-CSHL
TSC_42_C
- NORTH AMERICA 		60G=0.57999998
A=0.41999999
0.487 +/-0.029TSC-ORCHID-TSC_42_C-Sep-21-2003-ALLELE_FREQUENCYTSC-CSHL


  dbSNP summary of Genotypes for ss1358662 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
HapMap-YRI112112G=0.73214287
A=0.26785713G/G=0.50000000
A/G=0.46428570
A/A=0.03571429
Pr(chiSq=1.891,df=1)
=0.200		Genotype
Freq.

  Submitted individual genotype for ss1358662 back to top
There is no individual genotype data for ss1358662.

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