NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss1367645477           
Submitter
Handle1000GENOMES
Submitter SNP IDPHASE3_V1_6225
RefSNP(rs#)rs112791300
Submitted Batch IDPhase3_V1
Submitted DateAug 16, 2014
Publication CitedN.D.
First entry to dbSNPAug 16 2014 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodSEQ
Ascertainment Samplesize5008
PopulationN.D.
Allele
Observed AlleleGTGT/-
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassDIV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 5
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss1367645477|allelePos=26|len=51|taxid=9606|alleles='GTGT/-'|mol=Genomic
 GAGAGAGCGA GGCGGCTGGA GGTGG
 N
 GTGACACCAG GTGACTTAGC GGCCC

  Submitted Frequency for ss1367645477 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
AMR694GTGT=0.98269999
-=0.01730000
Phase3_V1-AMR1000GENOMES
AFR1322GTGT=0.92210001
-=0.07790000
Phase3_V1-AFR1000GENOMES
EAS1008GTGT=0.95240003
-=0.04760000
Phase3_V1-EAS1000GENOMES
SAS978GTGT=0.99080002
-=0.00920000
Phase3_V1-SAS1000GENOMES
EUR1006GTGT=0.97810000
-=0.02190000
Phase3_V1-EUR1000GENOMES


  dbSNP summary of Genotypes for ss1367645477 back to top
No sufficient data to compute Hardy-weinberg probability for ss1367645477.


  Submitted individual genotype for ss1367645477 back to top
There is no individual genotype data for ss1367645477.