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Submitted SNP(ss) Details: ss1494696           
Submitter
HandleTSC-CSHL
Submitter SNP IDTSC0331689
RefSNP(rs#)rs131
Submitted Batch IDTSC-WUGSC-1-2-000905-RESUBMISSION
Submitted DateSep 07, 2000
Publication CitedN.D.
First entry to dbSNPSep 7 2000 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodTSC-WUGSC-1-2
Ascertainment Samplesize10
PopulationN.D.
Allele
Observed AlleleC/G
Ancestral Allele
Allele OriginN/A
SNP ClassSNV
CpG CodenonCpG
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 5
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss1494696|allelePos=161|len=620|taxid=9606|alleles='C/G'|mol=Genomic
 CATCATCCAT TTCTTATGGG ACATGGATCA AGAGCCCTTG TGATCCCAGA TGTTCAACTT
 TGATCACCCT TCAATTTGTG CTTCTCTAAC AGTGATGCCC AGATTTAAAG ACAAGCTCTA
 GGTGTGGTCT GGACAGAGCA GAAGAGAAGG CAATGACAAT
 S
 TTCCTGGCCT CAACCACACT GCAACTGTTA ATACTGCTGG ATTTGCCTTA GCTTTGGGGG
 AACTTGCATC TCTTTCCAGT TCTCAGTGTT CTTACTGGGA CTGTCAGGTC ATAGGGATTT
 CTGAGAAGTT GGGCTTCCTT CTTTCTGAAG CGGACTCCTT TACTTCCTTT AACTAAAATT
 CAGGACTTGA CTGTTCTATT ATTATTACCA TCATTATAAT CATTATTAAA TTATCACATG
 TTAATTTTGA CCCATGTCAA GATATTTCTG GAGACCAATG GTCACTGGCT GACTTCTTTG
 TTACGGCATA CATAGATTGC ACAGGCATAT GAAATCTATA CTCACCCAAG TAAATTATAC
 TTGGAGATTT AGTAACGAGA AGAGCACCAA GGGCATGGAG GTCTCTGCAG CCTGACATTA
 ATTTGTCTGT TAATTAGCAT TTCTGCATAC AAATGCATA

  Submitted Frequency for ss1494696 back to top
There is no frequency submission for ss1494696.


  dbSNP summary of Genotypes for ss1494696 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
Caucasian2424C=0.62500000
G=0.37500000C/C=0.50000000
C/G=0.25000000
G/G=0.25000000
Pr(chiSq=2.613,df=1)
=0.150		Genotype
Freq.
PDpanel4040C=0.57499999
G=0.42500001C/G=0.64999998
C/C=0.25000000
G/G=0.10000000
Pr(chiSq=2.177,df=1)
=0.150		Genotype
Freq.

  Submitted individual genotype for ss1494696 back to top
There is no individual genotype data for ss1494696.

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