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Submitted SNP(ss) Details: ss15355541           
Submitter
HandleIIPGA-WEISS-MARTINEZ
Submitter SNP IDIIPGA-IL18R1_26846
RefSNP(rs#)rs11465648
Submitted Batch ID2.11
Submitted DateNov 14, 2003
Publication CitedN.D.
First entry to dbSNPNov 14 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodMETHOD-3
Ascertainment Samplesize94
PopulationN.D.
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 3
Genotype Summarypopulation count: 14
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss15355541|allelePos=101|len=201|taxid=9606|alleles='G/A'|mol=Genomic
 CATGCTTCAA AAGTATTGAG AATTGAAAAT ATTGGTGAAA GCAATCTAAA TGTTTTATAT
 AATTGCACTG TGGCCAGCAC GGGAGGCACA GACACCAAAA
 R
 CTTCATCTTG GTGAGAAAAG GTGAGAAAGA TTTATTTTTG GAAGTTTTGA AACTTAGCTC
 ATTGCTACTG AGANACATTT CAAAGATGGC CACTTTCTCA

  Submitted Frequency for ss15355541 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
E-0
NORTH AMERICA
40G=1.00000000
G/G=1.00000000
2.11IIPGA-WEISS-MARTINEZ
E-1
EUROPE
6G=0.83300000
A=0.16700000
0.278 +/-0.287G/G=0.66700000
A/G=0.33300000
A/A=0.00000000
0.3332.11IIPGA-WEISS-MARTINEZ
D-0
NORTH AMERICA
48G=1.00000000
G/G=1.00000000
2.11IIPGA-WEISS-MARTINEZ


  dbSNP summary of Genotypes for ss15355541 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-HCB
EAST ASIA
8282G=0.97560978
A=0.02439024G/G=0.95121950
A/G=0.04878049
Pr(chiSq=0.001,df=1)
=1.000
Genotype
Freq.
HAPMAP-ASW9696G=0.98958331
A=0.01041667G/G=0.97916669
A/G=0.02083333
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.
HAPMAP-CHD162162G=0.98765433
A=0.01234568G/G=0.97530866
A/G=0.02469136
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.
HAPMAP-GIH168168G=0.99404764
A=0.00595238G/G=0.98809522
A/G=0.01190476
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.
HAPMAP-MEX9898G=0.96938777
A=0.03061225G/G=0.93877554
A/G=0.06122449
Pr(chiSq=0.003,df=1)
=1.000
Genotype
Freq.
HAPMAP-TSI170170G=0.98235291
A=0.01764706G/G=0.96470588
A/G=0.03529412
Pr(chiSq=0.001,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss15355541 back to top
There is no individual genotype data for ss15355541.

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