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Submitted SNP(ss) Details: ss15425280           
Submitter
HandleSC_SNP
Submitter SNP IDNT_028050.13_10279894
RefSNP(rs#)rs10874498
Submitted Batch IDCHR1_NA17019
Submitted DateNov 14, 2003
Publication Cited[1] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPNov 14 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHR1_NA17019
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 3
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:1SNP2-296m08.p1kposition:-577quality:56

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss15425280|allelePos=485|len=2485|taxid=9606|alleles='A/G'|mol=Genomic
 TTTTCAAATT GAAACATAAC TTATTAGTTG GTTTATTTGA AAAAATAAAA GCCTAAAATA
 AACAAAATCA GTGTATCATA CATTGGAAAG GTGAGAGTAT TTGATATGGC TTGGATCTGT
 GTCTCCACCA AATTTCATGT TGAATTGTAA TGCCCAATGT TAGAAGTAGA GCTTGTTGGG
 AGGTGTTTGG GTCATGGGAA CTGTGATAGT TAATACTGAG TGTCAAGTTG ATTGGATTGA
 AGGATGGAAA GTATTGATCC TGGGTGTGTC TGTAAGGGTG TTGCCAAAGG AGATTAACAT
 TTGAGTCAGT GGGCTGGGAA AGGCATACCC ACCCTTAATC TAGGTGGGCA CAATCTAATC
 AGCTGCCAGC ATGACCAGAA TAAAAGTAGG CAGAAAAATG TGGAGATATT AGACTGTTGT
 AGCCTCCCAG ACTACATCTT TCTCCTGTGC TGGATATTTC CTGCCCTTGA ACACTGAACT
 CCTA
 R
 TTCTTCAGCT TTGGGACTCA GACTGGCTCC TTTGCTCCTC AGCTTGCAGA TGGCTTATTG
 TGAGATCTTG TGATCCTGTG AGTTAATATT CCTTAATAAA CTCCCCTTTA ATATACATCT
 ATCCTATTAG TTCTGTCCCT CTAGAGAACC CTGACTAATC TAGGCGCAGA TCCCTCATGG
 CTTGGTGCTG TCTCCATGGT GGTGAGTTCT CAAGAGATCT GCTTGTTGTA AAGTGTAGCA
 CCTCCCCTAC CCTCTCTTGC TCGTGCTTTC ACCAAGTGAA GTGCCTGCTC CATGAGCAAA
 AACCCCCTGA GGCCTCTCTA GAGGAGATGC CACTGTGTTT CCTATGCAGC CTGCAGAACC
 ATGAGCCAAT GAAACCTCTT TTCTTATAAA TTACCCAATC TCAGGTATGT CTTTATAGCA
 ATACAGGAAT GGCCAAAAAC AGAAAATTGG TACTGAGGAG CGGAGCATTG CTATAAAGGT
 ATCTGAAAAT GTAGAAGCAG CTTTTGAACT GGTAACAGGT AGAGGTTGGA AGCATATGGA
 GGGCTCAGAA GAAGATAGGA AGATGAGGGA AAGTTTGGAA CTGCTTAGAG ACTGGTTAAA
 TGGTTGTAAC CAAAATACTG ATAGTGATAT GGACACTGAA GTCCAGGCCT CGGAGGCCTC
 GGATGGAAAT GAGGAACTTA CTAGGAACTG GAGCGAAGGT CACACATGTT ATGCCTTAGT
 AAAGAGTTAG GCTGCATTCT GTTCATGCCC TAGGGATCTG TTGAAGTTTG AACTAAAGAG
 TAATGACTTA GGATATCTGG TGGAGGAAGT TTCTACGCAG CAAAGTGTTC AAGATGTGAT
 CTTGCTGTGT CTAATCACCT ATGATCAGAT ATGGGAGTAA AGGAATGGCT TAAAGTTTGA
 ATTTATATTT ATTAGAAAGC ATAGCATAAA AGTCTGGAAA ATTTGCAGCC TGGCCATGTG
 GCAGAGAAAG AAAATGCTTT TTTTTCCAGA GGCAAATTTA AGCAGGCTGT GGAGCAATCA
 TTTTCTAGAG ATATTGTGTA ACTAAAAGGG ATCCAAGTGC TAATATCCAA GACAATGGGG
 AAATGAACTT AAAGGCATAT GGGAGACCAT CACATCAGCC CCTCCCATCA CAGGCCCAGA
 GGTCTAGGAG GGAAGAATGG TTTTATGGGA CAAGCCTAGG GCCCCACTGC CCTACACAGC
 CCAGAGACAC TGCTTCCTGC ATCCCAGCCA CTTCATCTCC AGCCTTGACT CAAAGAGCTT
 CAGATACTTC TTGTGCTGCC ACTCTGGAGA GTACAAGGTG CCCTAAGCCT TGGTGGCTTC
 CATGTGATGT TAAGCCTGTG TGCACAGAAA GTGCAAGAGT GAATGAGGCC TGGCAACCTC
 TGCCTAGATT ATAGAGGAGG TATGAAAAAG CCTGGGTGCT CAGGAAGAAG CCTGATGCAG
 GGGTGGAGCC CCCACAGAGA ACAGAACCTC TATTAGAGCA GTGACAAGGG GAAATGTGGG
 GTTGGAATCC CCACACAGAG TCCCCAGTGG AACTCTCAGT GTAGCAAAGA CACAGGGTCA
 GAGATTCCAA AGCCTTGGGA GCCCAAGCCT TGCACTAGTA TGTCCTGGAT GAAGGCTATG
 GAGTCAAAGG AGATTATTTT GGAGTTTATG ATTTAATGAA TGCCCTGCCA GGTTTTGAAA
 TTGTTTGGGG GCTACAGCCC CTTTCTTTGG ACTGATTTCT CACCGTTGGA ATGACAATAT
 TTTTCCAATG TCTGTACCCC CATTGTATCT CTGAAGTAAA TAACCTTTTT TTTTATTTTA
 CAGGCCCATA GGTAGAAGGG ACTTGCCTTG TTTAGATGAG ACTTTGGACT TTGGGATTTT
 GAGTTAATGC TGGAATGAGT TAAGTCTTTA GGGGACTGTT GGGAAGGCAT GATTGTATTT
 TGCAGTGTGA GAAGAGCATG AGATTTGGAC GGGCTGGGGT GGAGTGATAT GGTTTGGATC
 TTTCTTCTCA CCAACTCTCT

  Submitted Frequency for ss15425280 back to top
There is no frequency submission for ss15425280.


  dbSNP summary of Genotypes for ss15425280 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-HCB
EAST ASIA
8484G=0.61904764
A=0.38095239A/G=0.66666669
G/G=0.28571430
A/A=0.04761905
Pr(chiSq=7.180,df=1)
=0.010
Genotype
Freq.
HapMap-JPT8484G=0.63095236
A=0.36904761G/G=0.45238096
A/G=0.35714287
A/A=0.19047619
Pr(chiSq=2.282,df=1)
=0.150
Genotype
Freq.
HapMap-YRI118118G=0.78813559
A=0.21186441G/G=0.62711865
A/G=0.32203391
A/A=0.05084746
Pr(chiSq=0.075,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss15425280 back to top
There is no individual genotype data for ss15425280.

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