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Submitted SNP(ss) Details: ss15791624           
Submitter
HandleSC_SNP
Submitter SNP IDNT_077569.2_679182
RefSNP(rs#)rs2000172
Submitted Batch IDCHR9_12_NA11321_2
Submitted DateNov 18, 2003
Publication Cited[1] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPNov 17 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHR9_12_NA11321
Ascertainment Samplesize3
PopulationN.D.
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:S9A_2-1751m07.p1kposition:-627quality:45sequence:S9A_2-662n21.q1kposition:324quality:51

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss15791624|allelePos=854|len=1665|taxid=9606|alleles='G/A'|mol=Genomic
 TGAGGGGGCT GTCGGGAAAC CTGTGTTCTG TTGACAGTTC TGTCAGTCAC TCTGGGCTTG
 AGGGTTCTCT AAGGAAAGCA TGGAGATTGG ACTGGAGTAT GTTAAGGACT GAATTGCATC
 CCTGCCAAAA ACAGCACGTT GGAGTCCTAC TCGCCAGCAC CTCAGGGTGT GACCTTATTT
 GGAGAAAAGT CTTTCCAGAG GCCATCAAGT TAAAATGAGG TCATTAGGAT GGGCCTTAAT
 CCAGTATGGC TGATGTCCTT ATAAAAAAGG GAAATTTGGA GACAGGCACA TGCAGAGAGA
 AGGTGATGAG AAGAGGGAGT GAAGACAGCT GACTACAGGT CAAGGACAGA CACCTGGATA
 GCTCCTTCCC GCAGCCTCAA AGGACCCAGT CCTGCCGACA CCTTGATCTT GGACTCCCAC
 CTTCCAGAAT CAGGAGAAAA TAAATTTTTG TTGTGGGCCG GTGCGACAGC TCATTCCCAT
 AATCTCAGCA CTTTGGGAAG CTGAGGCAGG AGGATCACTT GAGCCCAGGA GACTGAGACC
 AGCCTGGGCA GCATGGGGAG ACCTGTCTCT ACAAAAAATA AAATAGCTGA GCCTGGTGGC
 ACTTACCTGT GGTCCCAGTT AGTTGGAAGG CTGAAGGGGA AGACCGCTTG AGCCCAGGAG
 GTCAAGGCTG CAGTGGGCTA TGATTGCAGC ACTGTACTCC AGCCTAGGTG ACAGAGCGAG
 ATCCTATCTC TAAAAAAAAA AAAAATTAAA AAACTGTTGT GTAAGTCCCT CCATCTGAAG
 TACTTTGTTG CGACATCCTC AGCACACTAA TACAGTGTAC TGAAGCTTTT TTGTGTGTGC
 TGTAGCCCCT CTG
 R
 TCCTCCAGGG TTGATCCTGA GCCCCTTCTT AGAATAATGT TTACATTTAA AAAATAACAC
 ACTTTGGATT ACGAAGGAGA GAACTCTTGA AATACTGATA TCAAAATGCC AAATATAAAC
 ATTTACGATG TAGAAATATA TGTACCACTT TAATAATGCA TTCAATAGTG GCAAGTCTGA
 AAACAACCGT AATTTCACAG TAGAGATGAA GGGTAAATAC TCTTTCAAGA CATCTGCAAC
 AGGCTGGGTG TGGTGGCTCA TGCCTGTAAC CCCAGCACTT TGGGAGGCTG ATGTAGGAGA
 ATTGCTTAAG CCCGGAAGTT TGAGACTAGC CAGGGCAACA TAGTGAGACC CCATCTAAAA
 AGAATTAGCT GGGTGTGGTG GCACACGCCT ATAGTCCGAG CAACTTGGAG GCTGAGGTGG
 GAGGATCCCT CGAGCCCGGG TGGTCGAGGT TGCAGTGAGC TGTGATGGTA CCACTGCACT
 CCAGGTTGGG TGACAGAGCC AGACTCTGTC TCAAAAAAAA AACAAAAAAC AAAACTGCAA
 TAACCATCAT GTGCCATGAA CATATTATGA TTTTTACTGG TGACCGACAC AGAGGCTGCT
 CATGTGGTAT GCTGCCTATC TTCATAATGA AAATGCTAAA TATTAGTTCC TGGCTAGTGG
 AGGAAAAGAT TTTTTTTCCC ACCCAAGTTT ACATATTCTT GAATTTGATC TGTTCCTGGA
 CTGGGTGGTG TCCACTAGGG GACTTTTGGG GTCTGTGGTT AGGCGACTCT GGGTGGATTG
 TCCCATGAGG CTGATGCCTC TTGCTCTTTG C

  Submitted Frequency for ss15791624 back to top
There is no frequency submission for ss15791624.


  dbSNP summary of Genotypes for ss15791624 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU112112A=0.97321427
G=0.02678571A/A=0.94642860
A/G=0.05357143
Pr(chiSq=0.002,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss15791624 back to top
There is no individual genotype data for ss15791624.

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