NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss15889088           
Submitter
HandleSC_SNP
Submitter SNP IDNT_077567.3_59751
RefSNP(rs#)rs11517311
Submitted Batch IDCHR9_12_NA11321_2
Submitted DateNov 18, 2003
Publication Cited[1] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPNov 17 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHR9_12_NA11321
Ascertainment Samplesize3
PopulationN.D.
Allele
Observed AlleleC/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:S9A_2-1007b03.p1kposition:153quality:40sequence:S9A_2-269c11.p1kposition:-647quality:51

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss15889088|allelePos=201|len=401|taxid=9606|alleles='C/G'|mol=Genomic
 CCAACCTGGG AAACAAGAGC GAAAGTCCGT CTCCAAAACA AAACAAAACA CAAAATGAGC
 GCTGATCCGG GGGCGCCCGT TTCCTCGACC TCAGGCTGTG GCGCCTGCCA GTCCCCAACA
 TCCCGACAGC CCGACGGCGT CTCCGCTTTC CTCCTCCTCT CCCGGTACCA GGGTCTCTCC
 CCAGAAACAA ACTCGCATTC
 S
 TAACCGGCAT CTTGGCCTTG CGCTGGGGGT GACCCGCCCA AGCCACCATG AAGGGACGCT
 CGCACAAAGT GAAGTCCACA TACAAACAGC CCGACGGGAA ACGCGGCCGC GCTCGCCCCG
 CTGCACTCGC AGCGCGGGCA GGAAGCCTTT TCCTCACTTT TGCCTCGGTG TCCCGGAGCT
 GCAGCAGCGT CTCCCTGTCC

  Submitted Frequency for ss15889088 back to top
There is no frequency submission for ss15889088.


  dbSNP summary of Genotypes for ss15889088 back to top
No sufficient data to compute Hardy-weinberg probability for ss15889088.


  Submitted individual genotype for ss15889088 back to top
There is no individual genotype data for ss15889088.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement