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Submitted SNP(ss) Details: ss16090760           
Submitter
HandleSC_SNP
Submitter SNP IDNT_077569.2_668449
RefSNP(rs#)rs10906117
Submitted Batch IDCHR9_12_NA11321_2
Submitted DateNov 18, 2003
Publication Cited[1] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPNov 18 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodCHR9_12_NA11321
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec_g/a
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 5
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:S9A_2-1841b03.p1kposition:607quality:56

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss16090760|allelePos=2000|len=2489|taxid=9606|alleles='A/G'|mol=Genomic
 GCTCACACCT GTAATCCCAG CACTTTGGGA GGCCGAGAAG GGCAAATCAC CTGAGGTTGG
 GAGTTTGAGA CCAGCCTGGC CAACATGGTA AAACCCCATC TCTATTAAAA ATACAAAAAT
 TAGGCCAGGC ATGGTGGCTC ACACCTGTAA TCCCAGCACT TTGGGAGGCC GAGGCAGGCA
 GATCACTTGA GGTCAGGAGT TCAAGACCAG CCTGGCCAAC ATGGCGAAAC TCCATCTCTA
 CTAAAAATAC AAAAATTAGC CAGGCATCAT GGCACACATC GGTAGTCCCA GCTATACTCA
 GGAAGCTGAG GCAGGAGAAT CACTTGAACT TGGGACACGG AGGTTGCAGT GAGCTGAGAT
 CATGCCACTG CACTCCAGCC TTGGGGACAG AGTGAGACTC TGTCTCAAAA ACAAAACAAA
 ACAAAAAACA AAAAAAAAAA CACAAAAAAC TCTTAGATAC TAGACTTAAT ACCTGGGTGA
 TGAAATAATC TGTACAACAA ACCCCTATGA CATGAGTTTA CCTACCTAAC AAACCTTCAC
 ATGTACCCAC AAACCTAAAA TAAAAGTAAA AACAAAGCTG TTGGCCGGGC GTGGTGGCTC
 ACGCCTGTAG TCCCAGCAGT TTGGGAGGCT GAGGCGGGCG GATCACGAGG TCAGGAGATC
 GAGACCATCC TGGCTAACAT GGTGAAACCC TGTCTCTACT AAAAATACAA AAAATTAGCC
 GGGTGGGGTG GGGGGTGCCT GTAGTCCCAG CTGCTCCAGA GGCTGAGGCA GGAGAATGGC
 GTGAACCCTG GGGGGCGGAG CCTGCAGTGA GCAGAGATCA CACCACTGCA CTCCAGCCTG
 GGCGACAGCG AGACTCCATC TCAAAAAAAA AAAAAAAAAA AAAAAAAAAG CTGTCTTTGG
 ATATTTTCAA TGTAATCTAA CTTATCAACT ATTCCCTTTA TGGTTAGTGC TTTTTGTGTC
 TTGCTTAAGA AATCTTTCCC TGCCCTAAGG CCATAAGGAT ATTTGTGTGT GTTATTGTAT
 CAGTCATGGT CAAGTTAGGA AAACAGAAAT CACACTATAA ATTTCAAGGG AGAGAATCTA
 ATAAAGAGAA ATGGTCACAT AGGTTTCAGA GTCTGAAAAC CAAAACAGAA GCCCTAAGGT
 AACAGAGAGA ATAGCTTCAG AAATGGGTAC TGCCTCAAAG ACTAGAGGAG CAAAGGCAAG
 AGGGTGGTGT TATCAAAACC TAGTAGCTCA GAGAAGGGAT CCCTCACAGC GAGGAGACTC
 AGACTTCTAA GGGGGAGCTG CTGTCCAGCG GTGCTAATAG CCCAGAGGGG CTGTGATGAG
 ATTGGTTCCA GGGGAGTTGA AAGAAGCTGA AGGCTGGAAC CAAAATGCTG GCCTGCCGAG
 ACCACCTCGG TCGGGGAGAC CCTAACCCAG CAGCGCTAGA GGAATTAAAG ACACACACAC
 ACACAGAAAT ATAGAGGTGT GAAGTTGAAG TGGGAAATTA GGGGTCTCAT AGCCTTCAGA
 GCCGAGAGCC CCGAACAGAG ATTTACCCAC GTATTTATTA ACAGCAAGCC AGTCCTTAGC
 ATTGTTTCTA TAGATATTAA ATTAACTAAA AGTATCCCTT ATGGGAAATG AAGGGATGGG
 CCGAATTAAA GAAATAGGTT GGGCTAGTTA ACTGCAGCAG GAGCATGTCC TTAAGGCACA
 GATTACTCAT GCTGTTGTTT GCGGCTTAAG AATGCCTTTA AGCGGTTTTC CCGCCCTGGG
 TGGGCCAGGT GTTCCTTGCT CTCATTCTGG TAAACCCACA ACCTTCCAGC GTGGGCATTA
 TGGCCATCAT GAACATGTCA CAGTGCTGCA GAGATTTTGT TTATGGCCAG TTTTGGGGCC
 AGTTTATGGC CAGATTTTGG GGGGCTTGTT CCCAACACTG CCCAGGTGAT GGTAACAGTG
 CAGAGGACAT CTCTACTTCG CTCCTCCTGA ATTTCCATCT CTTTCTAGCA GCTCCTATTG
 CAAATTCTAG CAGGAAGCC
 R
 ACCAGCAAGG GGGAAATGAA GAGTCCTGGC CCCAGAATTA CAATGCAGGA CAAAGAAGTG
 TGGGTGTGGA GCTGAGAGAC AAGAGCTTAA TAATGGTTAT TTTCTTCTGT TTTTGAGACA
 GAGTCTTGCT CTGTCACCAG GTTGGAGGGC AATGGTGCAA TCTCGGCTCA CTGCAACCTC
 TGCCTCCTGG GCCTAAACGA TTCTCGTGCC TTGGCCTCCC AAGTAGCTAG TATTAAAGGC
 GTGTGCCACC ATGCCCAGCT AATTTTTATA TTTTTAGTAG AGATGAAGTT TTGCCATGTT
 GGCCAGGCTG GTCTTGAACT TCTGGCCTCA AGTGATTCTC CAGCATTGGC CTCCCAAAGT
 GCTAGGATTA CAGGCGTGAG CCACTGTGTC CAGCCACGGT TATCTTCTCG AGAAGCCTTG
 TGGTTTTGCC TTTTAGCTGT ACCTAAAACC TGCCTGGAAT TGGTCTTTGT GAATGATGAC
 AAGGGTTTG

  Submitted Frequency for ss16090760 back to top
There is no frequency submission for ss16090760.


  dbSNP summary of Genotypes for ss16090760 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
HapMap-CEU116116G=0.72413790
A=0.27586207G/G=0.51724136
A/G=0.41379312
A/A=0.06896552
Pr(chiSq=0.074,df=1)
=1.000		Genotype
Freq.
HapMap-HCB
- EAST ASIA 		8686A=0.60465115
G=0.39534885A/G=0.41860464
A/A=0.39534885
G/G=0.18604651
Pr(chiSq=0.666,df=1)
=0.439		Genotype
Freq.
HapMap-JPT8888A=0.54545456
G=0.45454547A/G=0.59090906
A/A=0.25000000
G/G=0.15909091
Pr(chiSq=1.616,df=1)
=0.251		Genotype
Freq.
HapMap-YRI114114A=0.57017541
G=0.42982456A/G=0.54385966
A/A=0.29824561
G/G=0.15789473
Pr(chiSq=0.684,df=1)
=0.439		Genotype
Freq.

  Submitted individual genotype for ss16090760 back to top
There is no individual genotype data for ss16090760.

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