Submitted SNP(ss) Details: ss161151677

Submitted SNP(ss) Details: ss161151677

Submitter
Handle	PERLEGEN
Submitter SNP ID	IVD00719735
RefSNP(rs#)	rs71651695
Submitted Batch ID	PGI_05_08-SEP-2009
Submitted Date	Sep 11, 2009
Publication Cited	[1] Resequencing of nicotinic acetylcholine receptor genes and association of rare and common variants wit nicotine dependence
First entry to dbSNP	Sep 11 2009 12:00:00:000AM

Resource Links
GenBank Accession	NC_000001.9
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	FLX_FLAP3
Ascertainment Samplesize	860
Population	PGI_05_PANEL

Allele
Observed Allele	G/T
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status	Not Validated
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	population count: 1
Genotype Summary	population count: 1
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 CACCTCTCTA TACTCCTGGA TGGTTACTCT CAGATCTGGG TGTCCCCTCC CCATGTCTCC
 C
 TCTGGTTTTG CTCTCCTCCC ATTAGGGGCT GGGTTGATG
 K
 GTAAGGAGGA AGGAACGCTT AGGCCAGGGC TGACTGTGCC CATCCTTTGG CAGTGCTGAC
 GGCATGTACG AGGTGTCCTT CTATTCCAAT GCCGTGGTCT

Submitted Frequency for ss161151677

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Estimated Heterozygosity +/-std.err.	Genotype Freq.	Submitted Hetero- zygosity	Submission Batch	Submitter
PGI_05_PANEL - NORTH AMERICA	860				G/G=0.93953502 N/N=0.05814000 G/T=0.00232600 T/T=0.00000000		PGI_05_08-SEP-2009	PERLEGEN

dbSNP summary of Genotypes for ss161151677

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
PGI_05_PANEL - NORTH AMERICA	810	810	G=0.99876541	T=0.00123457	G/G=0.99753088 G/T=0.00246914 T/T=0.00000000	Pr(chiSq=0.001,df=1) =1.000	Genotype Freq.

Submitted individual genotype for ss161151677

There is no individual genotype data for ss161151677.

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