Submitted SNP(ss) Details: ss161151692

Submitted SNP(ss) Details: ss161151692

Submitter
Handle	PERLEGEN
Submitter SNP ID	IVD00719863
RefSNP(rs#)	rs4952
Submitted Batch ID	PGI_05_08-SEP-2009
Submitted Date	Sep 11, 2009
Publication Cited	[1] Resequencing of nicotinic acetylcholine receptor genes and association of rare and common variants wit nicotine dependence
First entry to dbSNP	Sep 11 2009 12:00:00:000AM

Resource Links
GenBank Accession	NC_000008.9
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	FLX_FLAP3
Ascertainment Samplesize	860
Population	PGI_05_PANEL

Allele
Observed Allele	C/T
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	population count: 1
Genotype Summary	population count: 1
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 GATCCTGGAC TTATGATGGC ACCATGGTTG ACCTCATTTT GATCAATGAA AATGTCGACA
 GAAAAGACTT CTTCGATAAC GGAGAATGGG AAATACTGAA
 Y
 GCAAAGGGGA TGAAGGGGAA CAGAAGGGAC GGCGTGTACT CCTATCCCTT TATCACGTAT
 TCCTTCGTCC TGAGACGCCT GCCTTTATTC TATACCCTCT

Submitted Frequency for ss161151692

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Estimated Heterozygosity +/-std.err.	Genotype Freq.	Submitted Hetero- zygosity	Submission Batch	Submitter
PGI_05_PANEL - NORTH AMERICA	860				C/C=0.92558098 C/T=0.06976700 N/N=0.00232600 T/T=0.00232600		PGI_05_08-SEP-2009	PERLEGEN

dbSNP summary of Genotypes for ss161151692

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
PGI_05_PANEL - NORTH AMERICA	858	858	C=0.96270394	T=0.03729604	C/C=0.92773890 C/T=0.06993007 T/T=0.00233100	Pr(chiSq=0.294,df=1) =0.655	Genotype Freq.

Submitted individual genotype for ss161151692

There is no individual genotype data for ss161151692.

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