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Submitted SNP(ss) Details: ss162980559           
Submitter
HandleCOMPLETE_GENOMICS
Submitter SNP IDNA19240_36_chr1_53534
RefSNP(rs#)rs80011619
Submitted Batch IDNA19240_snpassay_chr1
Submitted DateSep 29, 2009
Publication Cited[1] Human Genome Sequencing Using Unchained Base Reads on Self-assembling DNA Nanoarrays
First entry to dbSNPSep 29 2009 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCOMPLETE GENOMICS SEQUENCING
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss162980559|allelePos=251|len=501|taxid=9606|alleles='A/G'|mol=Genomic
 CTCAGTTTGT TTTTGTCATA AATTTACCCT TCTGTGGCCC TAATAATGTG GGGAGCTTTT
 ATTGTGATTT TCCTCGGGTT ATTAAACTTG CATGCATGGA CACTTATGGG CTAGAATTTG
 TGGTCACTGC CAACAGTGGA TTCATATCGA TGGGCACCTT CTTTTTCTTA ATTGTATCAT
 ACATTTTTAT TCTGGTCACT GTCCAACGAC ATTCCTCAAA TGATTTATCC AAAGCATTCT
 TCACTTCGTC
 R
 GCTCACATCA CCGTAGTGGT TTTGTTTTTT GCTCCATGCA TGTTTCTCTA CGTGTGGCCT
 TTCCCTACTA AGTCATTGGA TAAATTTTTT GCCATCATGA ACTTTGTTGT CACCCCTGTC
 GTAAATCCTG CCATCTATAC TTTAAGGAAC AAAGATATGA AGTTTGCAAT GAGAAGGCTG
 AATCAACATA TTTTAAATTC TATGGAGACG ACATAACACA TTTGGTTGAT GAGAGCACAG
 GATAAATGCC

  Submitted Frequency for ss162980559 back to top
There is no frequency submission for ss162980559.


  dbSNP summary of Genotypes for ss162980559 back to top
No sufficient data to compute Hardy-weinberg probability for ss162980559.


  Submitted individual genotype for ss162980559 back to top
There is no individual genotype data for ss162980559.