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Submitted SNP(ss) Details: ss162983745           
Submitter
HandleCOMPLETE_GENOMICS
Submitter SNP IDNA19240_36_chr1_1077546
RefSNP(rs#)rs9442380
Submitted Batch IDNA19240_snpassay_chr1
Submitted DateSep 29, 2009
Publication Cited[1] Human Genome Sequencing Using Unchained Base Reads on Self-assembling DNA Nanoarrays
First entry to dbSNPSep 29 2009 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCOMPLETE GENOMICS SEQUENCING
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss162983745|allelePos=251|len=501|taxid=9606|alleles='C/T'|mol=Genomic
 GTCAGCTGGT CCGTCTGTCG CAGCAGCCAG TGATGACCAG CAGCTAAACC CCACACGCTG
 GCCAGCCTTT TTCCCTCCTG TCCTTTCCGT CCCAGAACCC CATCCAGGCC CCGTGGCCTC
 GTCACCTCTC CTTGGTCTGT GACAGCTTCT CAGACTTTCC TTGGTTTAGC AACCTTGACA
 GTTTTGAGGA GTGCTGCTCA GGTGTTTTGT AGAGAGTCCC TCAGTTTGGG TTTGTCTGAT
 GTTTTTCTCA
 Y
 GATTATACTC TGGGGTTATG GGTTTTGCGA AGAGGAGGAT GGAGTCCTAA GTTCCAGAGC
 CCAGTGTCCC ATCACCCCAT TGAGTCCGGG TTCCAGGCTC TCCACACAAC CCAGCTCTAT
 CATCCCATCG GGGATCCACG CTCTCCACAC GACCCAGCTC TATCATCCCA TCGGGGATCC
 AGGCTCTCCA CACAACCCAG CTCTATCATC CCATCAGGGA TCCACGCTCT CCACACGACC
 CAGCTCTATC

  Submitted Frequency for ss162983745 back to top
There is no frequency submission for ss162983745.


  dbSNP summary of Genotypes for ss162983745 back to top
No sufficient data to compute Hardy-weinberg probability for ss162983745.


  Submitted individual genotype for ss162983745 back to top
There is no individual genotype data for ss162983745.