NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss162998208           
Submitter
HandleCOMPLETE_GENOMICS
Submitter SNP IDNA19240_36_chr1_3002234
RefSNP(rs#)rs4648362
Submitted Batch IDNA19240_snpassay_chr1
Submitted DateSep 29, 2009
Publication Cited[1] Human Genome Sequencing Using Unchained Base Reads on Self-assembling DNA Nanoarrays
First entry to dbSNPSep 29 2009 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCOMPLETE GENOMICS SEQUENCING
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleC/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss162998208|allelePos=251|len=501|taxid=9606|alleles='C/G'|mol=Genomic
 CCTAGTGCCC CCTGGACTCA GCTTCCACAT CCACAGGATT GACAGGACGG TCTCCTCCTT
 CAGATGCCCT AGGGACCCCT GTGCTGCCCT GAGACACAGC CACCCCAAGA CGCAGCCTCA
 CAGTGTGTGC CGTGGGCAGC CTCTGGCCTC GGCCAGGAGG GTAGGATTTG AGGGGGGCAG
 GGGTCAGTGT GGGAGATGAC TCTGTGGAGT TGGGGGTGAT GTATGGGGGT CCATCTGCCC
 CTTGGAATGC
 S
 CTGGGGGCTG CTTGGGGTGC CCCAGGGGAG CCTCATATCA CAGCTCACTG TGCGGGTCCT
 CATGCTCAGA GGGTGGCCTT TGCCTGCAGC ATGGACTCGA GGTCCGCTCA GCATCTGACA
 GGGGTCTGGG GCCAGTGGAA CGTCACACTC CCTCCCTCCC TGTCTCTCCT CCTCCAAACG
 GCTCAGTGGG CCCTGGCTGG GACACCCCAC TTTCCTGCAA AGCCCTCGGG ACCTGCCCCC
 TAACAGTCCT

  Submitted Frequency for ss162998208 back to top
There is no frequency submission for ss162998208.


  dbSNP summary of Genotypes for ss162998208 back to top
No sufficient data to compute Hardy-weinberg probability for ss162998208.


  Submitted individual genotype for ss162998208 back to top
There is no individual genotype data for ss162998208.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement