Submitted SNP(ss) Details: ss1634169

Submitted SNP(ss) Details: ss1634169

Submitter
Handle	KWOK
Submitter SNP ID	OVLP-000925-219522
RefSNP(rs#)	rs4900
Submitted Batch ID	OVLP-000925-1-2
Submitted Date	Oct 04, 2000
Publication Cited	[1] A general approach to single-nucleotide polymorphism discovery [2] Overlapping genomic sequences: a treasure trove of single-nucleotide polymorphisms
First entry to dbSNP	Oct 4 2000 12:00:00:000AM

Resource Links
GenBank Accession	AC005262.1 AC024721.5
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	OverlapSnpDetectionWithPolyBayes
Ascertainment Samplesize	4
Population	N.D.

Allele
Observed Allele	C/T
Ancestral Allele
Allele Origin	N/A
SNP Class	SNV
CpG Code	nonCpG

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	population count: 1
Genotype Summary	N.D.
Genotype Submission	N.D.
Haplotype	N.D.

Comment
For parameters, see batch record.SNP-specific information (for explanation, see method record). SequenceLocalName1:AC005262 SequenceAccession1:AC005262 SequenceVersion1:1 SequenceContigName1:Contig1 SequenceContigPosition1:25913 SequenceLocalName2:AC024721 SequenceAccession2:AC024721 SequenceVersion2:5 SequenceContigName2:Contig27 SequenceContigPosition2:3302 PolyBayesConfidence:97

Fasta sequence (Legend)

 GACATCCATC ATGTTTCTCG TCGCCCTCAG CGAATACGAC CAAGTCCTGG TGGAGTCGGA
 CAACGAGGTG GGCCCTGCCC TGAGCAGGGG CAGCGTTGGG GGCCGGGCCT TCCCCACCTG
 CCAAGCCTGG GTCCCCTCAC CTGGGTCCCC CCAGCTGCCC CTTGGGCTGT GTGCAGTGGG
 GAGGGCCCCT CTGATTCCCT CTGCCTTCGC TCCCGCCAGA ACCGGATGGA GGAGAGCAAA
 GCCCTGTTCC GGAC
 Y
 ATCATCACCT ACCCCTGGTT CCAGAACTCC TCCGTCATCC TCTTCCTCAA CAAGAAGGAC
 CTGCTGGAGG ACAAGATCCT GTACTCGCAC CTGGTGGACT ACTTCCCCGA GTTCGATGGT
 GCGCCGGGCT GCGGCATGGG GAGGGGCTCG CGGGCAGGGC CTTACTGGGG GGAGGGGGCT
 GATATGGGAG AGGGGCTCAT

Submitted Frequency for ss1634169

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Estimated Heterozygosity +/-std.err.	Genotype Freq.	Submitted Hetero- zygosity	Submission Batch	Submitter
CEPH - MULTI-NATIONAL	184	C=0.68000001	T=0.31999999	0.435 +/-0.035			1_2004	SEQUENOM

dbSNP summary of Genotypes for ss1634169

No sufficient data to compute Hardy-weinberg probability for ss1634169.

Submitted individual genotype for ss1634169

There is no individual genotype data for ss1634169.

Disclaimer Privacy statement