NCBI
 dbSNP
dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss163702642           
Submitter
HandleCOMPLETE_GENOMICS
Submitter SNP IDNA07022_36_chr1_705211
RefSNP(rs#)rs3131984
Submitted Batch IDNA07022_snpassay_chr1
Submitted DateSep 28, 2009
Publication Cited[1] Human Genome Sequencing Using Unchained Base Reads on Self-assembling DNA Nanoarrays
First entry to dbSNPSep 28 2009 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodCOMPLETE GENOMICS SEQUENCING
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleG/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss163702642|allelePos=251|len=501|taxid=9606|alleles='G/T'|mol=Genomic
 GATGTTACAA TGCGCTGAGA TTGCGCCATT GCACTCCAGC CTGTGTAACA GAGGGAGACT
 CTGTCTCTAA AAAATTATAT GCAAGTGAGA GCTTTTCTTC CAGCACTCAT GCTCAGACTG
 AAGAAAGTAA TTGGGCCAGG CCCGGTGGCT CACGCCTTTA ATCCCAGCAT TTTGGGAGGC
 GGAGGCGGAA GTGGGTGGAT CACTTGAGCT CAGGAATTCC AGACTAGTTT GGGCAACATG
 GTGGAACCCT
 K
 TCTCTACAAA AATACAAAAA ATTAGCTGGA CATGGTGGCA CGCGCTTGTA GTCTCCGCAA
 CTTGCCGGGC TTAGGCGGGA GAATCGCTCA GCTGCAGCCT CGACCTCCAG GGGCAATCCA
 TTTCAGCCTC CCAAAGTGCT GAGATTACAG GAATGAGCCA TCGTGCCTGG CTTTACACTA
 TATTTTAACA CTTTTTTTGA AAATGGAAAC TTTTACAGGC AATTCACTTC CTTCAAACTA
 ATGATAAGGA

  Submitted Frequency for ss163702642 back to top
There is no frequency submission for ss163702642.


  dbSNP summary of Genotypes for ss163702642 back to top
No sufficient data to compute Hardy-weinberg probability for ss163702642.


  Submitted individual genotype for ss163702642 back to top
There is no individual genotype data for ss163702642.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement