NCBI
 dbSNP
dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss163737406           
Submitter
HandleCOMPLETE_GENOMICS
Submitter SNP IDNA07022_36_chr1_3683769
RefSNP(rs#)rs1175546
Submitted Batch IDNA07022_snpassay_chr1
Submitted DateSep 28, 2009
Publication Cited[1] Human Genome Sequencing Using Unchained Base Reads on Self-assembling DNA Nanoarrays
First entry to dbSNPSep 28 2009 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodCOMPLETE GENOMICS SEQUENCING
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss163737406|allelePos=251|len=501|taxid=9606|alleles='C/T'|mol=Genomic
 AGCCACTATC CTCACGGGCA CAGAGAAGGG AGGCCACAGG GCCAGATGAG GTTATTGGAG
 GGCTGAGGCT GCGCCTGCCC CAGGCCAGGT CCCGCCGAAA GCATCAAGTC AGGTAAACAG
 GAGGGGCTGC GCCAGTCTTG GTAGGGAGGC AGACTCCACA TCATCCGCCT TTGGGGCGAG
 CAGGCTCACT TGAGATCTGC CTGGGCCAGC CGGTGGCAGG TGGAGCTGCA TGGCTGATTG
 CACACTGCCC
 Y
 AAGGCTCCTG GCTCCAAACC CAAGGAGGGA GCCCAAGGGC CTGTCCTGGG CTGCGGTCTG
 AAGCAATGAT GCTTTCCTGG GAGCCTGTTG TTGGGTGGGC TGCTGCCTGC CCCAGCCCCA
 TGACAGCCTG GATCTTCAAA AAGAGATCCC TACCTCTGAC CTGCCACTCC CAAGGAGGGA
 AAGGAGTAGC CAGCTGGTAC CCTCCCTGAA GCCCAGCTTC ACAGGACAGC ACTGCCTTGG
 GGCTGCTGTA

  Submitted Frequency for ss163737406 back to top
There is no frequency submission for ss163737406.


  dbSNP summary of Genotypes for ss163737406 back to top
No sufficient data to compute Hardy-weinberg probability for ss163737406.


  Submitted individual genotype for ss163737406 back to top
There is no individual genotype data for ss163737406.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement