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Submitted SNP(ss) Details: ss16384117           
Submitter
HandleCSHL-HAPMAP
Submitter SNP IDCSHL-HuAA-200402.chr1.NT_028050.13_9036913
RefSNP(rs#)rs10875289
Submitted Batch IDCSHL-HuAA-200402
Submitted DateFeb 17, 2004
Publication Cited[1] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPFeb 17 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCSHL-HUAA-200402
Ascertainment Samplesize3
PopulationN.D.
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence position qualityHuAA503b19000149820182.R 155 57HuAA505s19600402021447.R -645 36

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss16384117|allelePos=405|len=729|taxid=9606|alleles='G/A'|mol=Genomic
 CCATAAACCC TTGAAATTAT ACAATTTTGT ATGTATTTAC ATTTTTCTTC TGGGAGGATT
 CATGGCTTTT TTTCAGGTTC TCAGAGGGAT CCTTGACACA GACATGCTAA GAACACTGGG
 CTAAAGTCTT CTGAAAAAGA AGACTTTACT AACAAAAGAC AAAGTTGTGG TATTTTGAAA
 AAACTGAATA CCTTCCTCTA ttcttttttt tttttttttt tttttgagag ggggtctcac
 tgcgtcacct gggctggagt gccatggtgc agtcatagct cactgcagcc tcaaactcct
 gggctttgat gattctccca cttcagtcaa ctgactaact ggaaatatag gtgcacactt
 ctgcacccca cccagctaac tatttttttt tttttttttt ttta
 R
 tttttgtaga ggcagggaca cactatgttg atcaggctgg tcttgaactt ctgggcttaa
 gctagcttcc cgcctgagcc tcccaaagtg gtgggattac aggcatgagc cactgtgctt
 ggccGTCAAT ACAGTTTTAA TTATTGATTT CATTTTCCTC TGAGAAAAAT AAAACCTGAG
 CTTGGAGAAA AAAAAAGTCT CTGAAAAAAG GGGACATTTT CTAGGGCAGT GGTTTTTCTT
 TTTTTTAATA CCTGCTGTTA TGAATCAACA GGATAATTAC AGTAATCTTG AGGACTATTT
 TAAAAAAGGA TTAAAGGAGT ATTC

  Submitted Frequency for ss16384117 back to top
There is no frequency submission for ss16384117.


  dbSNP summary of Genotypes for ss16384117 back to top
No sufficient data to compute Hardy-weinberg probability for ss16384117.


  Submitted individual genotype for ss16384117 back to top
There is no individual genotype data for ss16384117.