NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss16399802           
Submitter
HandleCSHL-HAPMAP
Submitter SNP IDCSHL-HuAA-200402.chr1.NT_034471.3_202523
RefSNP(rs#)rs2977670
Submitted Batch IDCSHL-HuAA-200402
Submitted DateFeb 17, 2004
Publication Cited[1] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPFeb 17 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCSHL-HUAA-200402
Ascertainment Samplesize4
PopulationN.D.
Allele
Observed AlleleG/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence position qualityHuAA505s19600402436891.R -37 48HuAA505s19600402287400.F 315 62HuAA505s19600401996821.F -520 40

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss16399802|allelePos=501|len=1001|taxid=9606|alleles='G/C'|mol=Genomic
 CTCATCACAT GTAGTCAGCT GTAGAAATCC TTAGCATGGC TGAAATTTTT CATATTAAGA
 CAAGACTAGA ACTTggccag gtgtggtggc tcacacctgt aatcccagca ctttgggagg
 ctgaggtggg tgaatcacct gaggtctgga gtttgagacc agctgaccaa catggtgaaa
 caccatctct actaaaaata caaaaaatta gccaggcgtg gttgcacatg cctgtaatcc
 tagctacttg ggaagctgag gtaggagaat tgcttgaacc caggaggtgg aggttgcagc
 aagctgagat cgtgccattg cactgcagtc tgggcaaaaa aagcaaaact ctgAagaaag
 agagagagag ggagagaggg agagagaaag gaagagacga tgagagacag agagaaggag
 agagaaagTA CAAAAGAACG AATGAACGAA CAAACTAGAA ATCGAGCAGG AACCTTGGAG
 GACCTATTGC TTAAGGTGTG
 S
 GCCAAAGAAA GTAAGTTAGG GCAAGAGACT AAGGTATGCC AGAGACCCAG GACAAAACAC
 AGTGCAGAGT GATGTCACAG AGCCAAATGG GAGTGCAAGC TATGGCAAGC CCTCCCAAGT
 ATGtgtgggt taaatgtaat taaattcaaa atctctcaac ccaaaaattt tctccacaaa
 ggaagtagag aaacaaaaca gttcattatt gaataagcat taaaccagaa tgtgatgtgT
 GAATATaatg gaatggaatg gaatggaatg gaatggaatg gaatggaatg gaatggagtg
 gagtggaatg gacccgaatg gaatggaacg gaacggaatg gaatggaacg cactcgaatg
 gaatggaacg gacatgaatg gaatggaatg gaacggacac gaatggaacg gaacggaacg
 gaatgGACTT gagtgggatg gaatggaatt gaatggactc taatggaatg gacatgaatg
 gaatggaatg gaCTCAATTG

  Submitted Frequency for ss16399802 back to top
There is no frequency submission for ss16399802.


  dbSNP summary of Genotypes for ss16399802 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU112112C=0.92857140
G=0.07142857C/C=0.85714287
C/G=0.14285715
Pr(chiSq=0.046,df=1)
=1.000
Genotype
Freq.
HapMap-HCB
EAST ASIA
9090C=0.78888887
G=0.21111111C/C=0.60000002
C/G=0.37777779
G/G=0.02222222
Pr(chiSq=0.810,df=1)
=0.371
Genotype
Freq.
HapMap-JPT8484C=0.66666669
G=0.33333334C/C=0.47619048
C/G=0.38095239
G/G=0.14285715
Pr(chiSq=0.857,df=1)
=0.371
Genotype
Freq.
HapMap-YRI118118C=0.50847459
G=0.49152541C/G=0.50847459
C/C=0.25423729
G/G=0.23728813
Pr(chiSq=0.018,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss16399802 back to top
There is no individual genotype data for ss16399802.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement