NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss16438541           
Submitter
HandleCSHL-HAPMAP
Submitter SNP IDCSHL-HuAA-200402.chr1.NT_077402.1_5074
RefSNP(rs#)rs3982632
Submitted Batch IDCSHL-HuAA-200402
Submitted DateFeb 17, 2004
Publication Cited[1] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPFeb 17 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCSHL-HUAA-200402
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleT/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence position qualityHuAA508s19600403544719.F 611 29

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss16438541|allelePos=201|len=492|taxid=9606|alleles='T/G'|mol=Genomic
 AAGTGCCCAC CTTGGCTCGT GGCTCTCACT GCAACGGGAA AGCCACAGAC TGGGGTGAAG
 AGTTCAGTCA CATGCGACCG GTGACTCCCT GTCCCCACCC CCATGACACT CCCCAGCCCT
 CCAAGGCCAC TGTGTTTCCC AGTTAGCTCA GAGCCTCAGT CGATCCCTGA CCCAGCACCG
 GGCACTGATG AGACAGCGGC
 K
 GTTTGAGGAG CCACCTCCCA GCCACCTCGG GGCCAGGGCC AGGGTGTGCA GCACcactgt
 acaatgggga aactggccca gagaggtgag gcagcttgcc tggggtcaca gagcaaggca
 aaagcagcgc tgggTACAAG CTCAAAACCA TAGTGCCCAG GGCACTGCCG CTGCAGGCGC
 AGGCATCGCA TCACACCAGT GTCTGCGTTC ACAGCAGGCA TCATCAGTAG CCTCCAGAGG
 CCTCAGGTCC AGTCTCTAAA AATATCTCAG GAGGCTGCAG TGGCTGACCA T

  Submitted Frequency for ss16438541 back to top
There is no frequency submission for ss16438541.


  dbSNP summary of Genotypes for ss16438541 back to top
No sufficient data to compute Hardy-weinberg probability for ss16438541.


  Submitted individual genotype for ss16438541 back to top
There is no individual genotype data for ss16438541.