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Submitted SNP(ss) Details: ss16494709           
Submitter
HandleCSHL-HAPMAP
Submitter SNP IDCSHL-HuAA-200402.chr10.NT_077569.2_670319
RefSNP(rs#)rs11596955
Submitted Batch IDCSHL-HuAA-200402
Submitted DateFeb 17, 2004
Publication Cited[1] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPFeb 17 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCSHL-HUAA-200402
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleA/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 5
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence position qualityHuAA508s19600403402392.F -76 48

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss16494709|allelePos=501|len=1001|taxid=9606|alleles='A/C'|mol=Genomic
 Taatgatgtc ctttctagca ttgtttccct ggaggtacac ggtctcattc agagacacct
 actgcattta gttgtcaatt tgtgttagtt ttctttaact tggcatagtt tctttttctt
 tcattttttt tttttttttg agatggagtc taactctgtc acccaggctg gagtgcagtg
 gcgccatctc ggctcactgc aacctccacc tcccgggttc aagcgattct cctgcctcag
 cctcccgagt agctgggact acaggtgcat gccaccatgc tcggctaatt tttgtatttt
 tagtagaggc ggggtttcac catgttggcc aggctggtct caaactcctg gcctcatgtg
 atctgcctgc ctcaacctcc caaagtgctg ggattacagg catgagccac cgcccctcac
 ctaatttggt atagtttctt aagctttttg tttttcatga tattgacaat tttgaagaat
 acaagccagt tattttatca
 M
 atgtttctca atttgatttt gtctcatgtt tctccactat tatgtttagg ctatacatcc
 ctggctagaa tattatggaa gtcatgttgt gtctcttggg gtatcaccta tgaaggcctg
 tcaccccacc tgcctcttgc gggtaattat tttgaccacc tgcccaaggt attgttcaat
 ttttccaccg tatatttact attttctccc ttggagctaa taagcaatct atggggaaac
 actggtgcca cgaagacatc ctactcctca tccaaatttc tttttaagtt tagctttcac
 tgatgattct tgtctcaacc aatctttgct ataatgattg cagaaacata attttccagc
 tccaccccct ccttctgtgt ttattgttca ggattctgct gtcaggagga gacttctctt
 gtccttcatt tttttttttg tttttctatT TATTATTATC ATTTTTTAGA GACTGGGTCT
 AGTTCTGTTA CGTAGGTGGG

  Submitted Frequency for ss16494709 back to top
There is no frequency submission for ss16494709.


  dbSNP summary of Genotypes for ss16494709 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU106106C=0.66037738
A=0.33962265A/C=0.49056605
C/C=0.41509435
A/A=0.09433962
Pr(chiSq=0.465,df=1)
=0.527
Genotype
Freq.
HapMap-HCB
EAST ASIA
8282A=0.87804878
C=0.12195122A/A=0.78048778
A/C=0.19512194
C/C=0.02439024
Pr(chiSq=0.324,df=1)
=0.584
Genotype
Freq.
HapMap-JPT7272A=0.83333331
C=0.16666667A/A=0.72222221
A/C=0.22222222
C/C=0.05555556
Pr(chiSq=1.440,df=1)
=0.251
Genotype
Freq.
HapMap-YRI116116A=0.85344827
C=0.14655173A/A=0.72413790
A/C=0.25862068
C/C=0.01724138
Pr(chiSq=0.067,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss16494709 back to top
There is no individual genotype data for ss16494709.

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