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Submitted SNP(ss) Details: ss16503593           
Submitter
HandleCSHL-HAPMAP
Submitter SNP IDCSHL-HuAA-200402.chr10.NT_008583.16_11097469
RefSNP(rs#)rs2456774
Submitted Batch IDCSHL-HuAA-200402
Submitted DateFeb 17, 2004
Publication Cited[1] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPFeb 17 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCSHL-HUAA-200402
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec/t_g
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence position qualityHuAA506s19600402950014.R -396 68

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss16503593|allelePos=306|len=684|taxid=9606|alleles='C/T'|mol=Genomic
 AACCACTCTG CAGAGGTAGC GCTGTTAGTT TTATTTGTAA TCTTACACTT GTATGTATGT
 TCACTTTGTA TGTATATAAA GATTTTTTTT TTTACACAAG GTGGACTTAT TTGCATATGT
 ATATATACAT ATTTTCCCTT TTTTGTGTAA AACATTATCA AGACGTAGAT CTACCTATGT
 CTATTTACAT TTTTGATATA attaaaccac ttccatattg atgaacattt aaattatttt
 ccaacttggt tattgttgct cttattaaca gtactgcact gaatgtcctt atagatattt
 atctt
 Y
 gtatgcaact ttataggata aatttttaga atgggaatga tggattgaag atgtttattt
 acattttgat agatattgcc ggttgccccc taaaaaactt gtagcaattt acTCTTAAAT
 ACTCATGGTG TGTAATACTT ATTGTTTTAG TACATCATTG CCAAAACTTG GTTTTATCAA
 TCTGTTAACT ATGTGAAAAA GGCATATTAA GATTGTTTTA ATTTTATATT TCATGACAAT
 TTAACACTTC ATATTTAGCT ATTATAAACC GCCTATATTT TCGTTAGGAT ACGTTCTTTA
 ACAATCTTGC ATGACTTTTG GACTTTCTGC TTTTATGTCT TGCTTAAGTC TTCCTCACTC
 AAAGATCGAA TGTATTAG

  Submitted Frequency for ss16503593 back to top
There is no frequency submission for ss16503593.


  dbSNP summary of Genotypes for ss16503593 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU120120T=0.77499998
C=0.22499999T/T=0.64999998
C/T=0.25000000
C/C=0.10000000
Pr(chiSq=4.811,df=1)
=0.050
Genotype
Freq.
HapMap-HCB
EAST ASIA
9090T=0.78888887
C=0.21111111T/T=0.60000002
C/T=0.37777779
C/C=0.02222222
Pr(chiSq=0.810,df=1)
=0.371
Genotype
Freq.
HapMap-JPT9090T=0.78888887
C=0.21111111T/T=0.57777780
C/T=0.42222223
Pr(chiSq=1.217,df=1)
=0.273
Genotype
Freq.
HapMap-YRI120120T=0.63333333
C=0.36666667C/T=0.50000000
T/T=0.38333333
C/C=0.11666667
Pr(chiSq=0.352,df=1)
=0.584
Genotype
Freq.

  Submitted individual genotype for ss16503593 back to top
There is no individual genotype data for ss16503593.

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