NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss165300086           
Submitter
HandleCOMPLETE_GENOMICS
Submitter SNP IDNA19240_36_chr1_224617547
RefSNP(rs#)rs747657
Submitted Batch IDNA19240_snpassay_chr1
Submitted DateSep 29, 2009
Publication Cited[1] Human Genome Sequencing Using Unchained Base Reads on Self-assembling DNA Nanoarrays
First entry to dbSNPSep 29 2009 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCOMPLETE GENOMICS SEQUENCING
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleC/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss165300086|allelePos=251|len=501|taxid=9606|alleles='C/G'|mol=Genomic
 AGATAAAATG AATCTCCAGC TGTTTGACAG CCAGCCACAA GGCAGCCTTC TCAGGACAGC
 AAGCCCCCGG CTTCTGTGCT GTCCAGGGTG CCTCGGGCTG TAGCAACAGC TTTGGAAACA
 CTTTACCTTT GACACTGTGC TTGCCCTTGG GTAACTTGCT GATATGTGAA GCGTGCTTCA
 GTTCATACCT ATTCAAAAGA GGACAGTCTC AGAAGAGGCC TTCACACTGG GCTCTCGAAA
 CCAACAGTTT
 S
 ATTAGGAGAA TAAGATCAGA TACAGAGATG AGATAAAAGT CCACAAAACC CAGACCATCT
 AAACTGCTCA GGCTCCCTCC TGAGTTTCTG GAACTGTTCC AGAACCTGAA ACTGCAGTTG
 CGGCTGAACA TAGTTTGTGC CCAGCGATCA CTGCTATGGG GCCATTTTCA AGGCAAGGCC
 CTATTTGGAG TGGTGGTCAG CAGCTCTAGG TTTCCGTCCA CATTCCACAG TCCCCAGACC
 CCTGGCCTTT

  Submitted Frequency for ss165300086 back to top
There is no frequency submission for ss165300086.


  dbSNP summary of Genotypes for ss165300086 back to top
No sufficient data to compute Hardy-weinberg probability for ss165300086.


  Submitted individual genotype for ss165300086 back to top
There is no individual genotype data for ss165300086.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement