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Submitted SNP(ss) Details: ss165997401           
Submitter
HandleCOMPLETE_GENOMICS
Submitter SNP IDNA20431_36_chr1_2703187
RefSNP(rs#)rs2377041
Submitted Batch IDNA20431_snpassay_chr1
Submitted DateSep 30, 2009
Publication Cited[1] Human Genome Sequencing Using Unchained Base Reads on Self-assembling DNA Nanoarrays
First entry to dbSNPSep 30 2009 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCOMPLETE GENOMICS SEQUENCING
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss165997401|allelePos=251|len=501|taxid=9606|alleles='C/T'|mol=Genomic
 GGCCTTCCTG GAGGAGCTGG GTCTTCCCTC ACATTCCCCA AGCCTGCAAC ACTTGGGGGG
 TTCTGGATTT CTGCAGAGAG CTTTAGTGTG ACCCCCACCC ACACCCTTAA GTCATGCCCT
 GCCCCTGCGT GATCATTAAA GTGGAAGGCC CCCTCCCTCC TGGAGCCCCC TTGCTGTGGG
 CATGGTCCTC ACCAGCCCCT GAGTGCCTGT GCTCTGGGCA CCCGGGGTCC CCTCCTTCCT
 CAGAAGCTCA
 Y
 GATTCGGTGT GACTTTGTTG ATCATTTTCT GGTAATGCTC AACATATTTG AGCATATTTC
 CAGAAACAAA TTTTCCTGCT CACTTTGCAG CTCTCTCTAA CTGGTTCCTG CCCCACCCTC
 TCGTTGGGGT CACCAAGAAC CTCGGCACCA CACGCCCAAC GCACACTCCT TGTCCTCTCC
 TTACGGACAT TGTGGCCACT CTCAGGGCTG CCTACCTGTC TTTATCTTGC AAACCCCCTT
 CTCTTCTGGC

  Submitted Frequency for ss165997401 back to top
There is no frequency submission for ss165997401.


  dbSNP summary of Genotypes for ss165997401 back to top
No sufficient data to compute Hardy-weinberg probability for ss165997401.


  Submitted individual genotype for ss165997401 back to top
There is no individual genotype data for ss165997401.

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