NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss167117040           
Submitter
HandleCOMPLETE_GENOMICS
Submitter SNP IDNA20431_36_chr1_150856267
RefSNP(rs#)rs11205042
Submitted Batch IDNA20431_snpassay_chr1
Submitted DateSep 30, 2009
Publication Cited[1] Human Genome Sequencing Using Unchained Base Reads on Self-assembling DNA Nanoarrays
First entry to dbSNPSep 30 2009 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCOMPLETE GENOMICS SEQUENCING
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleC/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss167117040|allelePos=251|len=501|taxid=9606|alleles='C/G'|mol=Genomic
 AAGTCAGGAA ACAACAGGTG CTGGAGAGGA TGTGGAGAAA TGGGAACACT TTTACAATGT
 TGGTGGGACT GTACCATTGT GGAAGTCAGT GTGGCGATTC CTCAGGAATC TAGAACTAGA
 AATACCATTT GACCCAGCCA TCCCATTACT GGGTATATAC CCAAAGGATT ATAAATCATG
 CTGCTATAAA GACACATGCA CACGTATGTT TATTGTGGCA CTATTCACAA TAGCAAAGAC
 TTGGAACCAA
 S
 CCAAATGTCC AACAATGATA GACTGGATTA AGAAAATGTG GCACATATAC ACCATGGAAT
 ACTATGCAGC CATAAAAAAT GATGAGTTCA TGTCCTCTGT AGGGACATGG ATGAAGCTGG
 AAACCATCAT TCTCAGCAAA CTATCGCAAG GACAAAAAAC CAAACACTGC ATGTTCTCAC
 TCATAGGTGC GAATTGAACA ATGAGGACAC ATGGACACAG GAAGGGGAAC ATCACACACC
 AGGGCCTGTT

  Submitted Frequency for ss167117040 back to top
There is no frequency submission for ss167117040.


  dbSNP summary of Genotypes for ss167117040 back to top
No sufficient data to compute Hardy-weinberg probability for ss167117040.


  Submitted individual genotype for ss167117040 back to top
There is no individual genotype data for ss167117040.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement