NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss167543411           
Submitter
HandleCOMPLETE_GENOMICS
Submitter SNP IDNA20431_36_chr1_224621925
RefSNP(rs#)rs1136410
Submitted Batch IDNA20431_snpassay_chr1
Submitted DateSep 30, 2009
Publication Cited[1] Human Genome Sequencing Using Unchained Base Reads on Self-assembling DNA Nanoarrays
First entry to dbSNPSep 30 2009 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCOMPLETE GENOMICS SEQUENCING
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss167543411|allelePos=251|len=501|taxid=9606|alleles='A/G'|mol=Genomic
 TGAATTATTG GGCGCCAGCC ACCTGTGTTT TAACAAGCTT TCCAGGAGAT CCTAACACAC
 ATGGAAGTTT GGGACCGCTG CTCTCAGGAT GAGAGGTTAA GATGCTTGAG GAAGGCCTGA
 CCCTGTTACC TTAATGTCAG TTTTGAGCTT CTCATAGTTG ACATCGATGG GATCCTTGCT
 GCTATCATCA GACCCTCCCC TGAGCAGACT GTAGGCCACC TCGATGTCCA GCAGGTTGTC
 AAGCATTTCC
 R
 CCTTGGCCTG GAGGAGCAAA AGAAAGCCCC CGACTTAGGT ATCATGGTGA ATGAGACAGA
 CTCACCCAGG TGGCAGAGAA AACCTACATG CAGAGAAGGT CCAACACAGT GAATGGCAAA
 CCCTCCTGCT GGTCAGGGCC AGCCTGTTAC CTGCTGCACA TATTGAGAGC TCATAAGGAC
 TTTCTGGAAT GTTAACAAGG CCTTGTGGCC TGGGGGAGTT GAGAGGTGGA AGAACTGTCT
 TTCCTCTCGT

  Submitted Frequency for ss167543411 back to top
There is no frequency submission for ss167543411.


  dbSNP summary of Genotypes for ss167543411 back to top
No sufficient data to compute Hardy-weinberg probability for ss167543411.


  Submitted individual genotype for ss167543411 back to top
There is no individual genotype data for ss167543411.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement