NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss169071854           
Submitter
HandleCOMPLETE_GENOMICS
Submitter SNP IDNA19240_36_chr13_28099216
RefSNP(rs#)rs4625581
Submitted Batch IDNA19240_snpassay_chr13
Submitted DateOct 01, 2009
Publication Cited[1] Human Genome Sequencing Using Unchained Base Reads on Self-assembling DNA Nanoarrays
First entry to dbSNPOct 1 2009 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCOMPLETE GENOMICS SEQUENCING
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss169071854|allelePos=251|len=501|taxid=9606|alleles='A/G'|mol=Genomic
 TGTTCTTGTG CTTTTGTCCA TCCTAAACAG TCAAAAATGT GTCCTGCCAC AGGTGAGGCC
 TGGAGCTAGG AAGGGGTATG TGCTCAATGG TTTTATGTGT GCACGGGGCT GGGGATGAGG
 CAGTGAAGGT GAAGGCTCAT AGCTTTCTGC TCACAATCCT CCAGGCCATG TGACATCCAC
 GCAGATGAGG GCATTCAGCA CCATTTCCTT GCATTGAATA TTGAAGAATA GCTAATCATT
 CCCTAAGATC
 R
 TTTTGAAGGT AACAGCAATA ATAATGTCCT TGTGAATGTC ATGTTATGCC CTGCACTTCA
 CACACACTTT CTCATTCAGT GCTTCTCCAC ACCGTAGGAG GAGGTATGAA AAGCCCCCTT
 TTACAGATTA GGAGTGTCTG TGGGCAGTGT ATAAAAATGT AAGTGGAGAC TTACCCCTTA
 CGTATATGCA TGTTTGCTCT CTTTATAACA TGAACATCAT GCCTGTTATA TGCCAGGAAC
 TCTTCAATGC

  Submitted Frequency for ss169071854 back to top
There is no frequency submission for ss169071854.


  dbSNP summary of Genotypes for ss169071854 back to top
No sufficient data to compute Hardy-weinberg probability for ss169071854.


  Submitted individual genotype for ss169071854 back to top
There is no individual genotype data for ss169071854.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement