NCBI
 dbSNP
dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss171986692           
Submitter
HandleCOMPLETE_GENOMICS
Submitter SNP IDNA20431_36_chr22_36887272
RefSNP(rs#)rs84473
Submitted Batch IDNA20431_snpassay_chr22
Submitted DateOct 01, 2009
Publication Cited[1] Human Genome Sequencing Using Unchained Base Reads on Self-assembling DNA Nanoarrays
First entry to dbSNPOct 1 2009 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodCOMPLETE GENOMICS SEQUENCING
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss171986692|allelePos=251|len=501|taxid=9606|alleles='C/T'|mol=Genomic
 AATGAAGACA GTGGAATATA AGCAGTCTCT GGAGGAAAAA GTAGAGTCAA GAAATAATTT
 TTTTTTAAAG AAAAAAATAA CCCATTGTAT AGCGATGGAA AATAACTTAG GTCAGGACAT
 TATAACAGAA AACTACAGAC TGGGAGGCTT AAACAACCTT TATTTCTCAC AGTTCTAGAG
 GCTAGGAAGT CTATGATCAA GGTGCTGGCT GATAGAGTTC CTGATGAGGG TTCACTTCCT
 GGTTTGCAGA
 Y
 GGCTATCTTC TCGTTGTGCC CTCACATGGC AGAGACAGAT CATCTCTTTC TTGCCTCTTC
 GTCTAAGGGC ACTAATCCCA TTCATGAGGG CTCCATCCTC ATGACCTAAT CACCCCCATA
 GTGCTCTACC TCCTAATACC ATCACACGAG GGATTGGGGC TTCAACATAT GATTTCGGGG
 GGATACTTTC AATCCATAGC AAAAAATATA TAGTAGAAAA GGGGAAAGTG TTATGTAGGA
 AAGAGGGGAG

  Submitted Frequency for ss171986692 back to top
There is no frequency submission for ss171986692.


  dbSNP summary of Genotypes for ss171986692 back to top
No sufficient data to compute Hardy-weinberg probability for ss171986692.


  Submitted individual genotype for ss171986692 back to top
There is no individual genotype data for ss171986692.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement