NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss17347394           
Submitter
HandleCSHL-HAPMAP
Submitter SNP IDCSHL-HuCC-200402.chr1.NT_034471.3_193980
RefSNP(rs#)rs3131984
Submitted Batch IDCSHL-HuCC-200402
Submitted DateFeb 19, 2004
Publication Cited[1] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPFeb 19 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCSHL-HUCC-200402
Ascertainment Samplesize3
PopulationN.D.
Allele
Observed AlleleT/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence position qualityHuCC101b19000131942612.R 633 41HuCC21b19000132025954.F -51 41

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss17347394|allelePos=501|len=1001|taxid=9606|alleles='T/G'|mol=Genomic
 aaaaattagt cgggcgtggt ggcaggtgcc tgtaatccca gctactcggg aggctgaggc
 agagaattgt ttgaacccgg gatgcggagg ttgcagtgag cggagatcgc gccactgcac
 tccagcctgg gcaacagacc aagactccgt ctaaacaaac aaaTATATGT GTGTATATAT
 ATGCGATCGA GCCCGGGAGG TTGAGATTAC AGTGAgctga gattatataa gcgatcgagc
 actggaggtt gatgttacaa tgcgctgaga ttgcgccatt gcactccagc ctgtgtaaca
 gagggagact ctgtctctaa aaaaTTATAT GCAAGTGAGA GCTTTTCTTC CAGCACTCAT
 GCTCAGACTG AAGAAAGTAA TTGggccagg cccggtggct cacgccttta atcccagcat
 tttgggaggc ggaggcggaa gtgggtggat cacttgagct caggaattcc agactagttt
 gggcaacatg gtggaaccct
 K
 tctctacaaa aatacaaaaa attagctgga catggtggca cgcgcttgta gtctccgcaa
 cttgccgggc ttaggcggga gaatcgctCA gctgcagcct cgacctccag gggcaatcca
 tttcagcctc ccaaagtgct gagattacag gaatgagcca tcgtgcctgg cTTTACACTA
 TATTTTAACA CTTTTTTTGA AAATGGAAAC TTTTACAGGC AATTCACTTC CTTCAAACTA
 ATGATAAGGA AGTGATGCTG TTCTGTTCTG TTTTGttttt tgtttttgtg ggtttttttt
 cttttttgag atggggtctt gcccaggttg gagtgaggtg gtgcaaacaa ggctcactgc
 agccttgacc ttcgggctca aggaatcctt ccccgtcagc ctccccggta gctaggacta
 caggtgcatg ctaccacgct tggctaattc tttttttgaa atggagtctc actctgtctc
 ccaggctggA GTGCAGTGGT

  Submitted Frequency for ss17347394 back to top
There is no frequency submission for ss17347394.


  dbSNP summary of Genotypes for ss17347394 back to top
No sufficient data to compute Hardy-weinberg probability for ss17347394.


  Submitted individual genotype for ss17347394 back to top
There is no individual genotype data for ss17347394.