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Submitted SNP(ss) Details: ss17353184           
Submitter
HandleCSHL-HAPMAP
Submitter SNP IDCSHL-HuCC-200402.chr1.NT_028050.13_8204545
RefSNP(rs#)rs11806162
Submitted Batch IDCSHL-HuCC-200402
Submitted DateFeb 19, 2004
Publication Cited[1] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPFeb 19 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCSHL-HUCC-200402
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 10
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence position qualityHuCC21b19000130010106.R -228 68

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss17353184|allelePos=499|len=699|taxid=9606|alleles='C/T'|mol=Genomic
 TAGTAACaat aatacttaac atcaattaag ctatttttat agtccagacc ctgttctaag
 cctttaatat tcatcaaccc cttcaaactc tttgcactta taagaactat aattttctct
 attttatagt taaagaaact gaagcatgga gaagttaagt agcttgtcca aggttgagcc
 aagacttgaa accagacagc ctggttccag agttggcacc cttatgatat tctatgttat
 tctgtATTAA TGTAATGCAA ATTTTGAGAA TAAGTGTTTA TTTTAattta tgtatgtgga
 aagacatata catatattta tatatatgaa aagatatata aatatTATGC CCTTGGATAT
 CTATCTTTAC TTATTCTGGT CAATGGAGGG GGAGGGTTAG AAATTAATTA AATAATTCTT
 GGATTGTCCA GGCCTCTGAC GTTCCCACCT TCTGATGCTT GCATCAGAAA ACAGAAGGGA
 ACAAAGGAAA AAAACACA
 Y
 ATGGCAATTT TGCTACAGTT TGAAGTTAGT TCTGCTTGGA GTTGGCTTTA AAGGGACAAG
 AGAACGGATA TACTGGTCAA AGTAACATCA GTTTTATGTA ACCACCCAGT CATCACAGGT
 GCTTCCGTTG GTACCAGCTT AGAGCTGAAC AGTGGAGGGT GCAGAGTGTG TATGGGTAAA
 TTCCCAAGAA GAACACAATT

  Submitted Frequency for ss17353184 back to top
There is no frequency submission for ss17353184.


  dbSNP summary of Genotypes for ss17353184 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-YRI226226C=0.78318584
T=0.21681416C/C=0.63716817
C/T=0.29203540
T/T=0.07079646
Pr(chiSq=2.218,df=1)
=0.150
Genotype
Freq.
HAPMAP-ASW9898C=0.82653064
T=0.17346939C/C=0.69387758
C/T=0.26530612
T/T=0.04081633
Pr(chiSq=0.274,df=1)
=0.655
Genotype
Freq.
HAPMAP-LWK180180C=0.83888888
T=0.16111112C/C=0.67777777
C/T=0.32222223
Pr(chiSq=0.983,df=1)
=0.343
Genotype
Freq.
HAPMAP-MKK286286C=0.89510489
T=0.10489511C/C=0.80419582
C/T=0.18181819
T/T=0.01398601
Pr(chiSq=0.144,df=1)
=0.752
Genotype
Freq.
HAPMAP-TSI176176C=0.99431819
T=0.00568182C/C=0.98863637
C/T=0.01136364
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss17353184 back to top
There is no individual genotype data for ss17353184.

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