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Submitted SNP(ss) Details: ss17354579           
Submitter
HandleCSHL-HAPMAP
Submitter SNP IDCSHL-HuCC-200402.chr1.NT_004321.15_177625
RefSNP(rs#)rs2606418
Submitted Batch IDCSHL-HuCC-200402
Submitted DateFeb 19, 2004
Publication Cited[1] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPFeb 19 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCSHL-HUCC-200402
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 6
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence position qualityHuCC21b19000129156322.R 313 59

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss17354579|allelePos=201|len=701|taxid=9606|alleles='A/G'|mol=Genomic
 GGAGAGATAT GCACAGAAAG GGACCCACAG GAAGCTGTGA GGATGAGGCA GGGACTGGCC
 AAGAATCACC ACGATGGGCG GCTTGAAGCA GCAACTTGAG TTGCTATGAT TTTTCTAAAA
 CTGCATAACA CATCTAACCA CAGATCTAAG AAGTTCTACA AACCCCAAAC AGGTCTATGA
 AAGTTAGGGC TGTGAATATG
 R
 GGTGGCCTAC AGAAAGATGG AGGGAGTAAT CATCAGGGTG AGGACCATCT CCTACCCAAG
 TTCACTGGGC AAATGCTGTC TTTCTCATAT CTATACCCAT CTCTGTCTTT CCTATCTCTA
 CCTTTCCTGG GCCTTCATAG AAAACTGCTC AAAACCAGAG AACAAGAGAA ATTCTAAAAA
 CAACCAAAAA GTGTAAGACC CATTACTTTC AAAAAAGCTT CAACTAGACA GAAAGCTAGG
 TAATAGACAC AACTGAAGCC CAAAGACAAT GAAATGATGA CTTAAATTTT TGAAATAAAG
 TAACtgcatt agtccattct catgctgata taaagaactg cctgagaatg gataatttat
 aaaggaaaga ggtttagttg actcagttcc tcaggactgg agaggcctca ggaaacttac
 aatcatggtg aaagtggaag caaacacgtc ctgtttctca tgggagcagg aagaaaaaga
 atgagtgccg agcaaagggg

  Submitted Frequency for ss17354579 back to top
There is no frequency submission for ss17354579.


  dbSNP summary of Genotypes for ss17354579 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU116116A=0.75000000
G=0.25000000A/A=0.56896549
A/G=0.36206895
G/G=0.06896552
Pr(chiSq=0.069,df=1)
=1.000
Genotype
Freq.
HapMap-HCB
EAST ASIA
9090G=0.60000002
A=0.40000001A/G=0.57777780
G/G=0.31111112
A/A=0.11111111
Pr(chiSq=1.867,df=1)
=0.200
Genotype
Freq.
HapMap-JPT8888G=0.52272725
A=0.47727272A/G=0.63636363
G/G=0.20454545
A/A=0.15909091
Pr(chiSq=3.336,df=1)
=0.100
Genotype
Freq.
HapMap-YRI118118G=0.53389829
A=0.46610171A/G=0.49152541
G/G=0.28813559
A/A=0.22033899
Pr(chiSq=0.009,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss17354579 back to top
There is no individual genotype data for ss17354579.