NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss17773077           
Submitter
HandleCSHL-HAPMAP
Submitter SNP IDCSHL-HuCC-200402.chr3.NT_005612.14_26030941
RefSNP(rs#)rs11929668
Submitted Batch IDCSHL-HuCC-200402
Submitted DateFeb 19, 2004
Publication Cited[1] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPFeb 19 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCSHL-HUCC-200402
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleC/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 12
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence position qualityHuCC101b19000134825702.F 47 41

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss17773077|allelePos=501|len=701|taxid=9606|alleles='C/G'|mol=Genomic
 AAGGCAGTGA CAGCCCCACA CCCCCAAACT GGTAGCTGCA ATATCTACAT TTTCCCACGG
 AAGTCTCTGT GTACAAAGAT GCAACTCCCG Cagctgggtg tcgtggctca cacctataat
 cccagcactt tgagaggtca agacaggagg atcccttggg gccaggagtt caaaaccagc
 ctaggcaaca tagccagacc ccaactctag aaaaatttta aaaaattagc caggtatggt
 ggcatgtgct ctagtcctag ctacccagga ggctgaggct ggaggtctct tgagtccagg
 agtttgacac tgcagtgagt ccatgatcgt gccatcatgc tctagcctgg gtgacagaac
 gagatcctgt ccctttaaag aaaaaaaaaa aaaaaaGACA CAGCTCCCAT GAATGGGATG
 GGAGTGGGGA GAGTATTGGG CAGGCTGTTC TGCCTTTCTC ATCTACAGGG TAAAAGAGAA
 GCTTACGGAA TTCAGCCAAG
 S
 CTTGTCTCTT GGCTGACCTG AAATGTCCAG AGATTATGCT TGTGCAGCCT CAGAGCAGCC
 CTGAGGCTTG TGGGTCAGGG CGGGCTGCAC CCACAATCTT TTCTCTGGCT GGCATGCAGG
 TTCTTGTTCC TGAAGATCAT GGCTATGCTC ACCGAGCTCC GCAGCATCAA TGCTCAGCAC
 ACCCAGCGGC TGCTGCGCAT

  Submitted Frequency for ss17773077 back to top
There is no frequency submission for ss17773077.


  dbSNP summary of Genotypes for ss17773077 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU226226C=0.79646015
G=0.20353982C/C=0.61946905
C/G=0.35398230
G/G=0.02654867
Pr(chiSq=0.952,df=1)
=0.343
Genotype
Freq.
HapMap-YRI226226C=0.88495576
G=0.11504425C/C=0.81415927
C/G=0.14159292
G/G=0.04424779
Pr(chiSq=10.485,df=1)
=0.003
Genotype
Freq.
HAPMAP-ASW9898C=0.81632656
G=0.18367347C/C=0.67346936
C/G=0.28571430
G/G=0.04081633
Pr(chiSq=0.109,df=1)
=0.752
Genotype
Freq.
HAPMAP-GIH174174C=0.91954023
G=0.08045977C/C=0.83908045
C/G=0.16091955
Pr(chiSq=0.103,df=1)
=0.752
Genotype
Freq.
HAPMAP-LWK180180C=0.78888887
G=0.21111111C/C=0.61111110
C/G=0.35555556
G/G=0.03333334
Pr(chiSq=0.410,df=1)
=0.527
Genotype
Freq.
HAPMAP-MEX100100C=0.87000000
G=0.13000000C/C=0.75999999
C/G=0.22000000
G/G=0.02000000
Pr(chiSq=0.038,df=1)
=1.000
Genotype
Freq.
HAPMAP-MKK286286C=0.90209788
G=0.09790210C/C=0.81118882
C/G=0.18181819
G/G=0.00699301
Pr(chiSq=0.123,df=1)
=0.752
Genotype
Freq.
HAPMAP-TSI174174C=0.77011496
G=0.22988506C/C=0.56321841
C/G=0.41379312
G/G=0.02298851
Pr(chiSq=2.475,df=1)
=0.150
Genotype
Freq.

  Submitted individual genotype for ss17773077 back to top
There is no individual genotype data for ss17773077.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement