NCBI
 dbSNP
dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss17943939           
Submitter
HandleCSHL-HAPMAP
Submitter SNP IDCSHL-HuCC-200402.chr7.NT_007933.13_20497437
RefSNP(rs#)rs340
Submitted Batch IDCSHL-HuCC-200402
Submitted DateFeb 19, 2004
Publication Cited[1] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPFeb 19 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodCSHL-HUCC-200402
Ascertainment Samplesize3
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence position qualityHuCC21b19000128126044.F -99 68HuCC101b19000132466206.R 248 62

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss17943939|allelePos=201|len=401|taxid=9606|alleles='C/T'|mol=Genomic
 GTAGGGTGGA GACAACACAG AAAGGAAGAA GCAAGAAAAG AACGTAGGAG AAAAGAGGCT
 TAGAGACTTG GCAGAATATC ATGCTCTGGG CTCCTGGTAA TTCCTGAAGC CTCAGTGTGT
 GTACAAACTC CAAATATATA CTTGTAGTTG TTGGAATTCT CATGGAAATC TGGAAAAGAG
 TTGAATTCTG GATCTAGGTT
 Y
 TCACTTGGCT GATATGGAAA GAGCATAGAT GAACACAGGC ATATAGGCAC CCTTCAATAT
 CTGAGTTATT TATAAAAGGT CCCAATACTA CTAAATAAGA AAATTGCTTA AATCCAAGTC
 ATTTAATATG CACACAAGAA TCTCTGTGAA ATGGTCTCAA TTTAACATCA ACATTTGAGC
 CTGGGTCCAT ATAACCCATA

  Submitted Frequency for ss17943939 back to top
There is no frequency submission for ss17943939.


  dbSNP summary of Genotypes for ss17943939 back to top
No sufficient data to compute Hardy-weinberg probability for ss17943939.


  Submitted individual genotype for ss17943939 back to top
There is no individual genotype data for ss17943939.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement