| Submitter | | Handle | KWOK | | Submitter SNP ID | OVLP-000925-564404 | | RefSNP(rs#) | rs273867 | | Submitted Batch ID | OVLP-000925-4-0 | | Submitted Date | Oct 05, 2000 | | Publication Cited | [1] A general approach to single-nucleotide polymorphism discovery
[2] Overlapping genomic sequences: a treasure trove of single-nucleotide polymorphisms | | First entry to dbSNP | Oct 5 2000 12:00:00:000AM |
| | Resource Links | | GenBank Accession | AC025489.1
AC025706.5
| | Submitted Gene Name | N.D | | Submitted Gene ID | N.D. | | Submitted SNP Synonyms | N.D | | Submitted linkout | N.D |
| | | Allele | | Observed Allele | G/A | | Ancestral Allele | | | Allele Origin | N/A | | SNP Class | SNV | | CpG Code | nonCpG |
| | | Variation | | Frequency Submission | N.D. | | Genotype Summary | population count: 5 | | Genotype Submission | N.D. | | Haplotype | N.D. |
|
| Comment | | For parameters, see batch record.SNP-specific information (for explanation, see method record). SequenceLocalName1:AC025489 SequenceAccession1:AC025489 SequenceVersion1:1 SequenceContigName1:Contig9 SequenceContigPosition1:8527 SequenceLocalName2:AC025706 SequenceAccession2:AC025706 SequenceVersion2:5 SequenceContigName2:Contig10 SequenceContigPosition2:1541 PolyBayesConfidence:99 |
>gnl|dbSNP|ss1794721|allelePos=1308|len=1563|taxid=9606|alleles='G/A'|mol=Genomic ATCAGGAAAT GTAAAATGTG CCTTCCAGAC CCCTTGGTGG TATACATGGG AGATTGGTTT
TAGGACACAC ACAGTCCCAT CCCCCACCCT GTGACCCCAT acaccccctg gatactcaaa
tccactgatg ctcaagttcc ttgcataaaa tggtatagtg tttgcatgtg acctatacac
aacctcttat gtgtacttta aatcatctct agattactta tattacccag tacaatataa
atgttatgta aatggttgtt atagtgtatt gtttagggaa taatgacaag aacaactttc
tatacatttg cagtacacca ttgttttacc cccaaatatt tttgatccaa ggttggttga
atcggaaccc agagatacag agggctgact ATACTTTAAG AATTAGaatt agctggctgt
ggtggtgggt gcctgtagtc ccagctactc gggaggctga cgcaggagaa aggcgtgaac
ccgggaggtg gagcttgcag tgagccgaga tcgtgccact gcactccagc ctgggcgaca
gagcgagact ctgtctctaa aaaaaaaaaa aaaaaaTTAG AAGGGGCTGT CAGGCGTGGT
GGCTCATGCC TATAATCCCA Gtcatgcctg taatcccagc actttgggag gctaaggtgg
gcatatcact tgagatcatg agttcaaaac cagcctggcc aacatggtga aacactgtgt
ctactaaaaa tacaaatatt agccaggtgt ggtggtgggc gcctgtaatc ttagctactc
aggaggctga gtcaggagaa ttgcttgaac ccaggaggtg gaggttgcag tgagctgaga
tcatgccatt gcactccagc ctgtgtgaca gagtgaaact ccatctcaaa aatacaaaaa
gaaTTAGAAA GGGCTTTAGA GTCCCACCAC TAATGCTCTT CTGTTCAGTA GTACACAAGA
CTAATAACTA CGAGATGTTA TGAACAGGGA AAAGAAGTAA GACCAAAAGA AATCATAAAT
TACTTTGGAT GGAACTTTTA GAATGGCAGA TGGAGGGATA AATTTGACAT TGTTCAAAAT
CATAGAGTaa actctcaaaa gtaaggggaa cctaaggaga caagatgatt aaatgtaata
ggagatactg gaacaacaaa aaagggacat tagatgcaat ttgaggaaat ctgataatgg
acttttgttg atttatcgat attggttgat taattgcaag aactaataaa ttgtaatacc
atactaatgt atgatgctaa taatggggga actgcggttt ccaggtt
R
tataagaact ctgtaatgtc ttaaatttgt ttgtaaatct aaacctttta aaataGCTAA
AAATTATAGA TACAATTTCT AAATGATTTA ATTAACAAAA CCAGTTTAAT TCTTCAGTTG
AAATGAGCAA GGTTAGGGAT ACCTGTGTGT TTCAGTGTAA TATCTGAAAG GAAAAGAATA
GATACATAAT TTATATCACT TCTCTCTGGA CTTAGGGTCT CTTGTCATAT ACATGACTGG
GCATCCATCA GCTTC
There is no frequency submission for ss1794721.
Population ID
-Class | Total
Sample
(2N) | Founder
(2N) | Major
Allele
Freq. | Minor
Allele
Freq. | Genotype
Freq. | HWE Goodness of Fit | Data
Source | | HapMap-CEU | 118 | 118 | A=0.68644071
| G=0.31355932 | A/A=0.47457626
A/G=0.42372882
G/G=0.10169491
| Pr(chiSq=0.015,df=1)
=1.000 | Genotype
Freq. | HapMap-HCB
- EAST ASIA | 88 | 88 | A=0.53409094
| G=0.46590909 | A/G=0.56818181
A/A=0.25000000
G/G=0.18181819
| Pr(chiSq=0.883,df=1)
=0.371 | Genotype
Freq. | | HapMap-JPT | 90 | 90 | A=0.57777780
| G=0.42222223 | A/G=0.62222224
A/A=0.26666668
G/G=0.11111111
| Pr(chiSq=3.411,df=1)
=0.100 | Genotype
Freq. | | HapMap-YRI | 118 | 118 | A=0.99152541
| G=0.00847458 | A/A=0.98305082
A/G=0.01694915
| Pr(chiSq=0.000,df=1)
=1.000 | Genotype
Freq. |
There is no individual genotype data for ss1794721.
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