NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss18259200           
Submitter
HandleSC_SNP
Submitter SNP IDSC-CHR1_NA07340-200402.chr1.NT_032977.6_8804911
RefSNP(rs#)rs9633363
Submitted Batch IDSC-CHR1_NA07340-200402
Submitted DateFeb 20, 2004
Publication Cited[1] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPFeb 20 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHR1_NA07340
Ascertainment Samplesize5
PopulationN.D.
Allele
Observed AlleleT/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence position qualityS1C_2-997b21.p1k 306 51S1C_2-819m13.q1k 442 56S1C_2-964k23.p1k 779 48S1C_2-964k23.p1ka 785 35

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss18259200|allelePos=501|len=1001|taxid=9606|alleles='T/A'|mol=Genomic
 CTtcctcaat agtccttggg ccttgaggag ttgaaaaact ttaatttttg gccccatgtc
 tcaggaatta ggtttatttt CTAAAATTGT TATTTTAttt tatttttcca taagttattg
 gggtacaggt ggtatttggt tacatgagta atttctttag tgtctatttg tgagattttc
 atgcacccat cacccgagca gtatacactg caccacattt gttgtctttt atctctcgcc
 ccctcccact cttcccccca agtccccaaa gtccattgta tcattcttat gccttgtgtc
 cttgtagctt aactcccaca tattagcgag aacatatgat gtttggtttt ccattcctga
 gttacttcac ttagaataat agtctccaat ctcatccagg tcattgcaaa ttctgttaat
 tcattcattt ttatggctta gtagtccatc atatatatat atatatatat atatatatat
 atatatatat atatatatat
 W
 tatatatata tatattaata tatattatat ataaaaatat ataaaattta tatatataat
 ttatatatat aaaaatatat aaaatttata tatataattt atatatataa aaatatataa
 aatttatata tataatttat atatataaaa atatataaaa tttatatata taatttatat
 atataaaaat atataaaatt tatatatata atttatatat ataaaaatat ataaaattta
 tatatataat ttatatatat aaaaatatat aaaatttata tatataattt atatatataa
 aatatataaa ttatatatat aattatatat ataATATAAA ATtatatata taattatata
 tataatataa aattatatat ataattatat atataatata aaattatata tatattgtat
 atatataaaa tatacaaaat ttatatatat aaaatataaa atatacataa aaataaatat
 atataattta tatataaata

  Submitted Frequency for ss18259200 back to top
There is no frequency submission for ss18259200.


  dbSNP summary of Genotypes for ss18259200 back to top
No sufficient data to compute Hardy-weinberg probability for ss18259200.


  Submitted individual genotype for ss18259200 back to top
There is no individual genotype data for ss18259200.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement