Submitted SNP(ss) Details: ss1883472

Submitted SNP(ss) Details: ss1883472

Submitter
Handle	KWOK
Submitter SNP ID	OVLP-000925-227747
RefSNP(rs#)	rs709766
Submitted Batch ID	OVLP-000925-5-0
Submitted Date	Oct 06, 2000
Publication Cited	[1] A general approach to single-nucleotide polymorphism discovery [2] Overlapping genomic sequences: a treasure trove of single-nucleotide polymorphisms
First entry to dbSNP	Oct 6 2000 12:00:00:000AM

Resource Links
GenBank Accession	AC021172.3 AL359271.6
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	OverlapSnpDetectionWithPolyBayes
Ascertainment Samplesize	4
Population	N.D.

Allele
Observed Allele	A/G
Ancestral Allele
Allele Origin	N/A
SNP Class	SNV
CpG Code	nonCpG

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	population count: 1
Genotype Summary	N.D.
Genotype Submission	N.D.
Haplotype	N.D.

Comment
For parameters, see batch record.SNP-specific information (for explanation, see method record). SequenceLocalName1:AC021172 SequenceAccession1:AC021172 SequenceVersion1:3 SequenceContigName1:Contig24 SequenceContigPosition1:16972 SequenceLocalName2:AL359271 SequenceAccession2:AL359271 SequenceVersion2:6 SequenceContigName2:Contig3 SequenceContigPosition2:3942 PolyBayesConfidence:99

Fasta sequence (Legend)

 TTGTCTACAT TAATACATAG CTGAAAAAAA TTCTGTTAAG TACCTGCCCA TTGATACAGC
 CTCCAGCAAT GATATTAGGA TCACTCGGAC AGAACTTGAA GCAGAAGATG TCATCTGGGC
 TCTCCAGCAT TAACTAAAGT AAACCCAGCA AATTCATGAA AGAATGAGAA AAGAGATTAA
 GATCATGGCG AGAAAATAAT
 R
 TTAAGACAGT TAAAAGTCTA ATTTTATAGC TATCTATAAG CAAGGTGCGT AGAGAGTCTA
 TTCTCAGAGT TCTGCCTCTG GACTAAAAGC TGCTTTTGCT TAATTTTATT GTGCACATTG
 GCCATACGAG TGACAGTGAG TATGTTCTCA AGGGGACCCA GGTATTCCCC AACCCACCCC
 TCAGTGGAAA CAAATTGTAG

Submitted Frequency for ss1883472

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Estimated Heterozygosity +/-std.err.	Genotype Freq.	Submitted Hetero- zygosity	Submission Batch	Submitter
CEPH - MULTI-NATIONAL	184	G=0.62000000	A=0.38000000	0.471 +/-0.024			1_2004	SEQUENOM

dbSNP summary of Genotypes for ss1883472

No sufficient data to compute Hardy-weinberg probability for ss1883472.

Submitted individual genotype for ss1883472

There is no individual genotype data for ss1883472.

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