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Submitted SNP(ss) Details: ss1884009           
Submitter
HandleKWOK
Submitter SNP IDOVLP-000925-232285
RefSNP(rs#)rs709766
Submitted Batch IDOVLP-000925-5-0
Submitted DateOct 06, 2000
Publication Cited[1] A general approach to single-nucleotide polymorphism discovery
[2] Overlapping genomic sequences: a treasure trove of single-nucleotide polymorphisms
First entry to dbSNPOct 6 2000 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodOverlapSnpDetectionWithPolyBayes
Ascertainment Samplesize4
PopulationN.D.
Allele
Observed AlleleA/G
Ancestral Allele
Allele OriginN/A
SNP ClassSNV
CpG CodenonCpG
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
For parameters, see batch record.SNP-specific information (for explanation, see method record). SequenceLocalName1:AL358789 SequenceAccession1:AL358789 SequenceVersion1:5 SequenceContigName1:Contig22 SequenceContigPosition1:1555 SequenceLocalName2:AL359271 SequenceAccession2:AL359271 SequenceVersion2:6 SequenceContigName2:Contig3 SequenceContigPosition2:3942 PolyBayesConfidence:99

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss1884009|allelePos=201|len=401|taxid=9606|alleles='A/G'|mol=Genomic
 TTGTCTACAT TAATACATAG CTGAAAAAAA TTCTGTTAAG TACCTGCCCA TTGATACAGC
 CTCCAGCAAT GATATTAGGA TCACTCGGAC AGAACTTGAA GCAGAAGATG TCATCTGGGC
 TCTCCAGCAT TAACTAAAGT AAACCCAGCA AATTCATGAA AGAATGAGAA AAGAGATTAA
 GATCATGGCG AGAAAATAAT
 R
 TTAAGACAGT TAAAAGTCTA ATTTTATAGC TATCTATAAG CAAGGTGCGT AGAGAGTCTA
 TTCTCAGAGT TCTGCCTCTG GACTAAAAGC TGCTTTTGCT TAATTTTATT GTGCACATTG
 GCCATACGAG TGACAGTGAG TATGTTCTCA AGGGGACCCA GGTATTCCCC AACCCACCCC
 TCAGTGGAAA CAAATTGTAG

  Submitted Frequency for ss1884009 back to top
There is no frequency submission for ss1884009.


  dbSNP summary of Genotypes for ss1884009 back to top
No sufficient data to compute Hardy-weinberg probability for ss1884009.


  Submitted individual genotype for ss1884009 back to top
There is no individual genotype data for ss1884009.

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