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Submitted SNP(ss) Details: ss1909465           
Submitter
HandleKWOK
Submitter SNP IDOVLP-000925-479216
RefSNP(rs#)rs601329
Submitted Batch IDOVLP-000925-5-0
Submitted DateOct 06, 2000
Publication Cited[1] A general approach to single-nucleotide polymorphism discovery
[2] Overlapping genomic sequences: a treasure trove of single-nucleotide polymorphisms
First entry to dbSNPOct 6 2000 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodOverlapSnpDetectionWithPolyBayes
Ascertainment Samplesize4
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral Allele
Allele OriginN/A
SNP ClassSNV
CpG CodenonCpG
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
For parameters, see batch record.SNP-specific information (for explanation, see method record). SequenceLocalName1:AC022786 SequenceAccession1:AC022786 SequenceVersion1:3 SequenceContigName1:Contig27 SequenceContigPosition1:16576 SequenceLocalName2:AL353647 SequenceAccession2:AL353647 SequenceVersion2:3 SequenceContigName2:Contig4 SequenceContigPosition2:9808 PolyBayesConfidence:99

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss1909465|allelePos=285|len=485|taxid=9606|alleles='C/T'|mol=Genomic
 GGCCGGGCCT CAGAAACGGG CGAGCCCGGG CGCGGGAGGA AGCGGCGGCC CCGGCTCGGG
 TCCTGCGACG CCCAGCTCCC CTCGGGGCGC CCCCCGAGGG gtccccgccc cccgccgcgg
 ccccgcccct gcctcaaggc cccgcccccc gtggccggcg ctggccccgc cccTTGGCCC
 GGGCTGCTGG GAGTCCCCGG CGGGGCGGGG GTCAGCTCTG GTCCCGGTGG TCCTGGGCGC
 GGCGCCATGG CCTCCGAGGC GGTGAAGGTT GTCGTGCGCT GCCG
 Y
 CCCATGAACC AGCGGGAGCG AGAGCTGCGC TGCCAGCCCG TGGTGACTGT GGACTGCGCG
 CGCGCCCAGT GCTGCATCCA GAACCCGGGC GCCGCCGACG AGCCGCCCAA GCAGTTCACC
 TTCGACGGCG CCTACCACGT GGACCACGTC ACCGAGCAGA TCTACAACGA GATCGCCTAT
 CCGCTGGTGG AGGTGAGGGC

  Submitted Frequency for ss1909465 back to top
There is no frequency submission for ss1909465.


  dbSNP summary of Genotypes for ss1909465 back to top
No sufficient data to compute Hardy-weinberg probability for ss1909465.


  Submitted individual genotype for ss1909465 back to top
There is no individual genotype data for ss1909465.

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