NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss19135319           
Submitter
HandleCSHL-HAPMAP
Submitter SNP IDCSHL-HuDD-200402.chr1.NT_004321.15_1040240
RefSNP(rs#)rs9286791
Submitted Batch IDCSHL-HuDD-200402
Submitted DateFeb 20, 2004
Publication Cited[1] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPFeb 20 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCSHL-HUDD-200402
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec/t_g
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence position qualityHuDD101b19000139416434.F -130 57

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss19135319|allelePos=201|len=701|taxid=9606|alleles='C/T'|mol=Genomic
 CCCGCGTGAT TACGTTCCAG GCCAGAAGAC AGAACGCGCC AGGCACCGCG GGCTCCCCGC
 CAGCCTGCTG CCCACGGTTC CTCGTGGGGT TCCCACTCTC TTCATCCCTG CTCTTCCTGA
 GCCACGCCAC ATGCACTTGC CCTGCAGAAT GTGGGGCTTA TGCAGGCCTG ACTGCCTGGG
 CAGCCAGCTT CTTTCCTTTA
 Y
 GACCAGCTGT GGGACCGTCT GCATGGGGAC AGGGAGCTCA TCTCGTCCTC CTGTTGGATA
 TAAACGCGGG ATCGCTGGTT CCCTGAGTCT TCTGGACATT CGAGTTGTTC CTGGTTCCTT
 CCCTTCTATT TAAACAACAC TCACGAggct gggcgcggtg gctcacgcct gtaatcccaa
 cactttggga ggcagaggtg ggtggatcac ctgaggtcag gattttgaga ccagcctggc
 cagcttggtg aaaccccgtc tctactaaaa acacaaaatt agctgggtgt ggtggcgcat
 ctcgtgtccc caacagctaa tcccagctac tcaggaggct gaggcaggag aattgcttga
 acgtgagagg cggaggttgc agtgagccga gatcacatca gtgcactcca gcccgggcaa
 cagggtgaga ctccatctca aaaacaaaCA ACGCTTCCCA GGGACACTGC TCCAGCCGCT
 CTCCCATTCT CTGGTGGACC

  Submitted Frequency for ss19135319 back to top
There is no frequency submission for ss19135319.


  dbSNP summary of Genotypes for ss19135319 back to top
No sufficient data to compute Hardy-weinberg probability for ss19135319.


  Submitted individual genotype for ss19135319 back to top
There is no individual genotype data for ss19135319.