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Submitted SNP(ss) Details: ss19187408           
Submitter
HandleCSHL-HAPMAP
Submitter SNP IDCSHL-HuDD-200402.chr10.NT_008583.16_11098279
RefSNP(rs#)rs2448348
Submitted Batch IDCSHL-HuDD-200402
Submitted DateFeb 20, 2004
Publication Cited[1] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPFeb 20 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCSHL-HUDD-200402
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence position qualityHuDD21b19000141908478.R -150 57

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss19187408|allelePos=455|len=678|taxid=9606|alleles='G/A'|mol=Genomic
 CACTCAAAGA TCGAATGTAT TAGAATAATA CATGTCAGTA TTTTTCTGGT AGTTTTAGTA
 AGTCCTGTCT TCCACACATA CTTTTTTTGT CTTAAATTCT GTATTAAGAT TTATTTTGAC
 TTAAAAACTG GGATACAGAT TCTGCTTTAT CTTTTTCCAA ATGGCTAGCC AGTTGTTCTA
 ACTGGTTTTA TGTACAGGCA acaatggttt tacttacaat ttttcagttt tacaatgaag
 cagaaatgat gcacattcac tagaaaccat acttcattta cccatacaac cattctgttt
 tttcactttc agtacagtat tcaataaata atgaggtatt caacacttcc aactatatgc
 taatgtaagt gttttgagca caattaaggt gggctacgct tagctacgtt tggtaggtta
 ggtgtgttca atgcatttcg acaaggtatt ttca
 R
 cttagaatga gtttaACCAG ATGGATCATC CGTTTTGTTT TGTTTTTTGA ACACCACTTG
 TCCCTCTAAG ATGGAGCATC TGTATTACTT TCCAATTTCA AACTGTAAGT CATTTTTCTG
 TGTACTTTGT TTTTGTAATA TCCATGCTAC TTCAGATGTC AATGACATTG TCTTTGGCAA
 CAAATGTCTT GTAAAGCACT TTTCTCTGAA CTAAGCAGCA TTT

  Submitted Frequency for ss19187408 back to top
There is no frequency submission for ss19187408.


  dbSNP summary of Genotypes for ss19187408 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU120120A=0.77499998
G=0.22499999A/A=0.64999998
A/G=0.25000000
G/G=0.10000000
Pr(chiSq=4.811,df=1)
=0.050
Genotype
Freq.
HapMap-HCB
EAST ASIA
9090A=0.78888887
G=0.21111111A/A=0.60000002
A/G=0.37777779
G/G=0.02222222
Pr(chiSq=0.810,df=1)
=0.371
Genotype
Freq.
HapMap-JPT9090A=0.78888887
G=0.21111111A/A=0.57777780
A/G=0.42222223
Pr(chiSq=1.217,df=1)
=0.273
Genotype
Freq.
HapMap-YRI118118A=0.62711865
G=0.37288135A/G=0.50847459
A/A=0.37288135
G/G=0.11864407
Pr(chiSq=0.449,df=1)
=0.527
Genotype
Freq.

  Submitted individual genotype for ss19187408 back to top
There is no individual genotype data for ss19187408.

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