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Submitted SNP(ss) Details: ss1955200           
Submitter
HandleKWOK
Submitter SNP IDOVLP-000925-374014
RefSNP(rs#)rs206018
Submitted Batch IDOVLP-000925-5-2
Submitted DateOct 06, 2000
Publication Cited[1] A general approach to single-nucleotide polymorphism discovery
[2] Overlapping genomic sequences: a treasure trove of single-nucleotide polymorphisms
First entry to dbSNPOct 6 2000 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodOverlapSnpDetectionWithPolyBayes
Ascertainment Samplesize4
PopulationN.D.
Allele
Observed AlleleG/C
Ancestral Allele
Allele OriginN/A
SNP ClassSNV
CpG Codec_g/!a
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
For parameters, see batch record.SNP-specific information (for explanation, see method record). SequenceLocalName1:AC009833 SequenceAccession1:AC009833 SequenceVersion1:3 SequenceContigName1:Contig30 SequenceContigPosition1:2476 SequenceLocalName2:U89335 SequenceAccession2:U89335 SequenceVersion2:1 SequenceContigName2:Contig1 SequenceContigPosition2:37830 PolyBayesConfidence:97

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss1955200|allelePos=4455|len=5206|taxid=9606|alleles='G/C'|mol=Genomic
 AATGTTCATA ATAAAAGGTT AAAAAATAAA ATAAAAAAGT GAAAAAAGAG GGTAGGTTAG
 GGTATCTGTC TTGAGCCTTC TATCAAAAGT TGTGGTTCTg gccgggcacg gtggctcacg
 cctgtaatcc cagcagtttg ggaggtcaag gcgggtggat cacttgaggt caggattttg
 agaccagcct ggccaacatg gtgaaacccc atctctacta aaaatacaca catacacaaa
 attagctagg tgtggtggca ggcacctgta atcccagcta ctggggaggc tgaggcaggt
 gaattgcttg agcccgggag gtagaggttg cagtgagctg agattgcacc actacattcc
 agcctgagtg acagagcaag actctgtctc aaaaaaaaaa aGCTGTGGTT CTatatctca
 aaataataaa agccatatat gacaaaccca cagctaacat catattgaat ggggaaaagt
 tgaaagcctt tcctctaaga tctggaacaa gacaaggatg ctcactttca ctatttttat
 tcaaggtaat actggaagtc ctggccagag caattaggca ggagaaagaa ataaagggca
 tccaaattgc aaaagaagaa ctcaaattat ccatgttcac agatgacata atcctatatt
 tagaaaaacc taaagaaaac actggttata aacaaattca gtaaagctgt aggatacaaa
 atcaatgtag aaaaagtagt agcatttcta tacgctaaca gcaaacaatc agaaaaagaa
 atcaagaaag caatcccatt tataatagtt acaaaaaata aaaacaaatg aataaattta
 accaaagaag tgaaagagta ctgcaatgac agctataaaa cattgatgaa ataaattgaa
 gaggacacaa aaaaatggaa agatatcctg tgttcatgga ttggaagaat gaatactgct
 aaaatgtctg tgcttaccaa agtgatctac agagtcatgc aacccctatg aaaataccaa
 taatattctt tacagaaata gaaaaaacaa ccctaaaatt tatctgaact gtaaaagacc
 caaatagcca aagcagtcct gagcaaaaag aacaaagcta gaggtaccac actacctaac
 ttaaaaatat actataaagc tatagtaacc aaaacagcat ggtgctggca taaaaaacag
 acacatagac caatggaatg taatagagag cccagaaaaa caagtccaaa catttaacag
 ccaacttact ttcttttttc ttttctttcc tttttttttt tttgagatgg agtcttgctc
 tgttgccagg ccggagtgca atggcacgat ctggctcact gcaacctcca cctcctgggt
 tcaagcgatt ctcctgcctc agcctcctga gtagctggga ttacaggtgc gcaccaccat
 gcctggctaa tttttgtatt tttagtagag acgggggttt cactatgttg gtcaggctgg
 tctcgaactc ctgaccttgt gatctgccca cctcggtctc ccaaaatgct gggattacag
 gcatgagcca ccactcccgg ccagccaact tactttcaac aaaggcacca agtacacaca
 ctggggaaag gacactctct tcaataaatt gtgctgggaa aactggatat ccatatgcag
 aagaaactaa acctaggccg ggcggggtgg ctcacgcctg taatcccagc actttgggag
 gcggaggtgg gtggatcacc tgaggtcagg agtttgaaac cagcctgacc aatatggtga
 aaccccatct ctactaaaat tacaaaaatt agccgggcgt agtggtgtgc acctgtagtt
 ccagctactc aggaggctga ggcaggagaa tcagttgaac ttgggaggtg gaggttgcag
 tgagctgaga tcataccact gcactccaga ctgggcaaca gggcaacaga gcaagactct
 atcccccccc ccaaaaaaaa agaaaaaaag aaactaaatc tctatctgtc atcatataca
 aaatagatta aagccttaca tgtacagctg gaaacttgaa gccactaaaa aaaaaattca
 gccgggcacg gtgggtcaca cctgtaatcc tcaaacacaa ggtcaggagt ttgagaccag
 cctggccaac atggtgaaac cccgtctcta ctaaaaatac aaaaaaatag ctgggcgtgg
 tggtgggcac ctgtaaattc cagctatttg ggaggctaag gcaggagaat cgcttgaacc
 caggaggcaa aggttgcagt gagtcaaatt tgcgccactg cactccagcc caggcgacgg
 tgcaagactc cttctcaaaa aaaaaaaaaa aaaaaatcat ttgggaaatg cttcaagaca
 ttggtctggg caaaagtttt ttgggtaaga cctcaacagc caggcaacaa aggcaacaac
 agacaaatgt gattacatca agctaaaaag tgtctgtgca gcaaaggaaa caattaatgg
 agtgaagagg caacctacag aatagaagaa aatatttgca aactgtctga caagggatta
 ataatcagaa cgtataagga actcaacagc aaacaccacc actaccacca ccgacaaata
 atgtggttta aaaaatgagc aaattatctg aacagacatt tctcaaaaga agacatacaa
 atggccaaca ggtatatgga tgcaaatcag ggaaatgtaa atcaaaacca caatgagata
 tcatctcaca ccagttaaag tggctattat tgaaaacaca agggccaagt gtggtggccc
 atgcctgtaa tcccagcact ttcagaggtt gaggcgggaa gatcatttga ggtcaggagt
 tcgagaccat cctggccaac atggtgaaac cccatctcta ctaaaaatac aaaaaattag
 ccaagcatgg tggtccacgc ctgtgatccc agttacttgg gaggctgaag tacaagaatc
 gcttgaatct gggaggcaga ggttgcagtg agctgagatc aagtcactgt gatccagcct
 gggcaacaca gcaagactct gtctcagaaa aggaaaaaaa atgcaaaaaa tagcagatgc
 tggcaaggat gcagagaaag gggaaccctc atacactgtt ggtgggaatg taaactaaca
 cagccagtat ggagaaaagt atggaagttt ctcaaaaatt aaaaatagat ctaccatgtg
 atcaatctac tgttcattac atatccaaag gaaatcagta tcttgaagag atatctgcat
 ccccatattt attgcagcac tgttcacaat agctaacata tggaattaac tgaagtgcca
 tcaacaaatg aatggaaaaa agaaactgtg tcatatagac acaatggaat attattcagc
 cagaaaaaga atgaaatcct atcattttca gcaacatgga tgaaactgaa ggacattatg
 ttaagtgaaa taagccaggc acggaaagac aaatattgca tgtctctcac cttcaccttt
 gtgCCACTGC CTTAGTTAGT CCTGACCTTT CTTGCATTCC AGGTAGATAC TTGCATCAGC
 CTCCTATTGC ATGTGTaata ttgctcctca ctcatatgtg ggagctaaaa aagttagtct
 catggaagta gggtagaatg atggttacca gaggttagaa agggtggcag ggagggggag
 atgaagagag gttggttaat ggatacaaaa ttatggtcat atagaaggaa taagttctag
 tgttagatag cagagaagga tggtgatagt taacaatttg tatttcaaaa taactagaag
 agaagatttg aaatgttctc aacacaaaga aatgatgttt gagatgatag atatcccaat
 taccctgatt tgatcatgat acattgtatg catgtatcaa aatatcacat gtgtccaggt
 gcggtggctc atacctgtaa tcttatcact ttggcaggct gagcgggtgg atcactttag
 gtcaggagtt ctgagaccag cctgcccaac atggtgaaac cccatctcta ctaaaaatac
 aaaaattagc caggcgtggt ggcgcgttcc tgtaatccca gctactcggg aggctgagac
 atgagaactg cttgaacctg ggaggcgggg gtttcagtga gccaagatta tgccactgcc
 cttcagcctg ggggatagag cgactctgtc tccaaaaacg agagagaaaa aaaaaaagaa
 accaaaaaac tcacatgtac cccatagata cgtatgacta ccgtttgtca ataacaaaag
 aaaATAAAAT GGCAACCACA CACACAAAAA AGTTGTGGTT CTGAGCATAT GAATCAGGCT
 GCTTAGACTT GAATGCCAGC TTTGCCTCTC CTGGCTTAGT GACCTGGACC ACAAAGAAGA
 GGCCCTAATC CAGC
 S
 TGGGGAGAAG TTAGGGACAT CTTCCTGAAG AAGATGCCTC CTGAACACCA GCCTGTGGAA
 Gaggggttgg gaaggccatt ccaggtagtg tcaatagcag ggataaaggc tgagaggcaa
 gaatcagtat ggggtacgtg gcaaagtcag cagcagtttc atgttgctgg agcagagagt
 agaagggtgg gatggggaga gctgaggcct gagaggcagg cagggctggg tcatgcaggc
 cttggacttt attcagaatg aggcgggcag cctccgaagg ttcagcaggg gagagacagg
 tcaactggac attttcagta gagtaccctg gccacggggt aaaggctgaa cctatagaag
 gacaagtgtg gaggcagaga ctgtagttag gaggctgatg caagtatcta tctggaacgc
 aacaaaggtc aggactcagg cagtgggaca aagggtgaag gtgaaagcac agacttgaga
 aaacttcagg agataaagtg gcatgacttt gtggttagtt gggtgtgtgg ggttaaaaaa
 aataaaagga gGTGAAATGG ATACATTGGG TCTTCCCTCA GTCACTACTG TCTCTCCCAT
 CCAGCCCACC CTTGTCTTTC CTCCCCCTTC TCCTGCAGAC CCTCTCACCT GGCAGAGATA
 CCCACTGGGC TGGGCCATGC AGGTGGCCCC GTTCTGGCAA GGCCTGGACT CACATGGGTT
 CACGTGATCC TGGCACAGGC TGCCTTGGAA T

  Submitted Frequency for ss1955200 back to top
There is no frequency submission for ss1955200.


  dbSNP summary of Genotypes for ss1955200 back to top
No sufficient data to compute Hardy-weinberg probability for ss1955200.


  Submitted individual genotype for ss1955200 back to top
There is no individual genotype data for ss1955200.

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