Submitted SNP(ss) Details: ss1961576

Submitted SNP(ss) Details: ss1961576

Submitter
Handle	KWOK
Submitter SNP ID	OVLP-000925-611977
RefSNP(rs#)	rs125872
Submitted Batch ID	OVLP-000925-5-2
Submitted Date	Oct 06, 2000
Publication Cited	[1] A general approach to single-nucleotide polymorphism discovery [2] Overlapping genomic sequences: a treasure trove of single-nucleotide polymorphisms
First entry to dbSNP	Oct 6 2000 12:00:00:000AM

Resource Links
GenBank Accession	AJ251973.1 AL356221.7
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	OverlapSnpDetectionWithPolyBayes
Ascertainment Samplesize	4
Population	N.D.

Allele
Observed Allele	A/G
Ancestral Allele
Allele Origin	N/A
SNP Class	SNV
CpG Code	nonCpG

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	population count: 1
Genotype Summary	population count: 13
Genotype Submission	N.D.
Haplotype	N.D.

Comment
For parameters, see batch record.SNP-specific information (for explanation, see method record). SequenceLocalName1:AJ251973 SequenceAccession1:AJ251973 SequenceVersion1:1 SequenceContigName1:Contig1 SequenceContigPosition1:102975 SequenceLocalName2:AL356221 SequenceAccession2:AL356221 SequenceVersion2:7 SequenceContigName2:Contig7 SequenceContigPosition2:5765 PolyBayesConfidence:97

Fasta sequence (Legend)

 TTCAGGGAAT GCAAACTGAC ACTAGTATCA GCCTGAGCCA GGCATAATTG GAAAGGGAAT
 CTTTCCCCAC CCCCAACCTT GTCTTGCCTC CCTCCTTACA AAAAAAAAAA ATAAATCATA
 TATTATCTCA AGCAGCTCTG TTATGTAGGA AACATAAGTC TGGAAGAAAA GACAGATGGG
 GTGGGGGATG GTTTATGAGG GCGGTCGAGC AACTGTCCTT TATATCCACT GAGGAGAGAT
 CAGGAGAAAA TGATAGTAAC AAGAAGAGCA AGAAGGACTG AGGTTAGACT TTAAGAACTT
 GCCTTTATGA TAAATAAGAG CCAGGAGTGA TGGGCGGAGG AAGCCAGGGC CATCTCCCTC
 CATGCCTATC TCCCCAGCAG CCCACATCCT TGGCTTACTG CCTGCCTGGA AGATGTT
 R
 CCTACCTGTA CCCTGGGGGA GAAAGAGCAA GTGGGACAGG GCTGCTGAAT ATTCTGCCTT
 TCTCCTGGGT GGGAGCGGCC TTCCCTCACT CTCAGCTCCC TCCTGGCCTG CAATTTCAAG
 GGCCTGCAGA TTCAAGGACT TGGGGTTTCT GGGAGGCAGG GAAGTATGGG GCTCTGTGTG
 GGCTCCTTGG CAGAACCAGC

Submitted Frequency for ss1961576

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Estimated Heterozygosity +/-std.err.	Genotype Freq.	Submitted Hetero- zygosity	Submission Batch	Submitter
CEPH - MULTI-NATIONAL	184	G=0.75000000	A=0.25000000	0.375 +/-0.045			1_2004	SEQUENOM

dbSNP summary of Genotypes for ss1961576

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
HapMap-CEU	226	226	G=0.85840708	A=0.14159292	G/G=0.73451328 A/G=0.24778761 A/A=0.01769911	Pr(chiSq=0.042,df=1) =1.000	Genotype Freq.
HapMap-JPT	172	172	G=0.95930231	A=0.04069768	G/G=0.91860467 A/G=0.08139535	Pr(chiSq=0.012,df=1) =1.000	Genotype Freq.
HapMap-YRI	226	226	G=0.68584073	A=0.31415930	A/G=0.48672566 G/G=0.44247788 A/A=0.07079646	Pr(chiSq=1.895,df=1) =0.200	Genotype Freq.
HAPMAP-ASW	98	98	G=0.79591835	A=0.20408164	G/G=0.61224490 A/G=0.36734694 A/A=0.02040816	Pr(chiSq=0.838,df=1) =0.371	Genotype Freq.
HAPMAP-CHB	82	82	G=0.98780489	A=0.01219512	G/G=0.97560978 A/G=0.02439024	Pr(chiSq=0.000,df=1) =1.000	Genotype Freq.
HAPMAP-GIH	176	176	G=0.94886363	A=0.05113636	G/G=0.89772725 A/G=0.10227273	Pr(chiSq=0.025,df=1) =1.000	Genotype Freq.
HAPMAP-LWK	180	180	G=0.71666664	A=0.28333333	G/G=0.51111114 A/G=0.41111112 A/A=0.07777778	Pr(chiSq=0.014,df=1) =1.000	Genotype Freq.
HAPMAP-MEX	100	100	G=0.97000003	A=0.03000000	G/G=0.94000000 A/G=0.06000000	Pr(chiSq=0.003,df=1) =1.000	Genotype Freq.
HAPMAP-MKK	286	286	G=0.69930071	A=0.30069929	G/G=0.52447551 A/G=0.34965035 A/A=0.12587413	Pr(chiSq=4.065,df=1) =0.050	Genotype Freq.
HAPMAP-TSI	176	176	G=0.83522725	A=0.16477273	G/G=0.67045456 A/G=0.32954547	Pr(chiSq=1.036,df=1) =0.317	Genotype Freq.

Submitted individual genotype for ss1961576

There is no individual genotype data for ss1961576.

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