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Submitted SNP(ss) Details: ss19722646           
Submitter
HandleCSHL-HAPMAP
Submitter SNP IDCSHL-HuDD-200402.chr7.NT_007819.14_10901181
RefSNP(rs#)rs71
Submitted Batch IDCSHL-HuDD-200402
Submitted DateFeb 20, 2004
Publication Cited[1] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPFeb 20 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCSHL-HUDD-200402
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence position qualityHuDD101b19000143694274.R 250 68

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss19722646|allelePos=201|len=401|taxid=9606|alleles='G/A'|mol=Genomic
 CTTGGTTGTC ATCACATCGT TTCCTCTTGT TCTAGAACCC CTAGACCATG ATAAGTCTAT
 TTTCTCACAC TGCTTTTTAG TTGATCAGAG TCCTTTGCTA CATACAAAAT TGCAAGTGAC
 AGCAATCACC CCAATTCCTC CTCCTTGTAC CTCCATTCCT GCCTTGCTTC ACTCCACCTA
 CAACGAATCC ACCTGTTCCT
 R
 CAGTTGCCAA CTGAATTGGC AGGTCTGAAT TAAACTGCTG GGTTTGACAT TTAAAAAATG
 GAGTTTTCAG TACTTCTGGG TTCTCCTTTT ATTAGGCTAA GCATGAAGGC TGCTAATATT
 CACCCCACTC ATCGCAAGAC ACATGATATC TATGACAAGG CTCCTTAAAA AAATAGCAGT
 AAGGCTTCTG GGATTACTTA

  Submitted Frequency for ss19722646 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
CEPH
MULTI-NATIONAL
184G=0.50999999
A=0.49000001
0.500 +/-0.0021_2004SEQUENOM


  dbSNP summary of Genotypes for ss19722646 back to top
No sufficient data to compute Hardy-weinberg probability for ss19722646.


  Submitted individual genotype for ss19722646 back to top
There is no individual genotype data for ss19722646.

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