NCBI
 dbSNP
dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss197885397           
Submitter
HandleBUSHMAN
Submitter SNP IDBUSHMAN-chr1-744365
RefSNP(rs#)rs3115859
Submitted Batch IDBUSHMAN1
Submitted DateFeb 16, 2010
Publication CitedN.D.
First entry to dbSNPFeb 16 2010 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodBUSHMAN_METHODS
Ascertainment Samplesize10
PopulationN.D.
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss197885397|allelePos=201|len=401|taxid=9606|alleles='A/G'|mol=Genomic
 AGCCAGTGAG GCAAGTGTAT CATCCTGTTG ATGAATTCAC AGCATTAACT CTGGGAGTTG
 GGGACAGTGT GTATTCTTCC TCCAGACACT CTCTGTTTCT CCTGGATGGA AAGGTTCTGC
 TACTTGTCCC GTGGTCAGGC CCAGCCAATG GAACGGAATG GAAGTGACTC TGCCCCTTAT
 TGGCAGAAAC TTTAAAAGCC
 R
 CACAACGTTC CTGCACCCTC CCCTCTGCCA TGAGCCTGGC AGTGCTCAGG ATGGGAAAAT
 TATCTCACCT GGGCCTGAGG ATACAGGAGC TACCCCCAGC CTGCAGTGGA AGAGAAGCAT
 GGACAAGTGA TTAAACTTTG TGTTTTCAAG CCACAGAGGT TTTTTGAAGT TGTTTGCTAC
 CATGCTTTGT CCCTACAAAC

  Submitted Frequency for ss197885397 back to top
There is no frequency submission for ss197885397.


  dbSNP summary of Genotypes for ss197885397 back to top
No sufficient data to compute Hardy-weinberg probability for ss197885397.


  Submitted individual genotype for ss197885397 back to top
There is no individual genotype data for ss197885397.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement