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Submitted SNP(ss) Details: ss19829354           
Submitter
HandleCSHL-HAPMAP
Submitter SNP IDCSHL-HuFF-200402.chr1.NT_004836.15_1932044
RefSNP(rs#)rs10925290
Submitted Batch IDCSHL-HuFF-200402
Submitted DateFeb 21, 2004
Publication Cited[1] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPFeb 21 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCSHL-HUFF-200402
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleC/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence position qualityHuFF101b19600401261660.F -491 57

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss19829354|allelePos=501|len=767|taxid=9606|alleles='C/A'|mol=Genomic
 GAGTTTGGGG AATGTTACTC TAAAATATAG CTCCCTGGTA TGAGTGTTTT GAAGTAAAGG
 CCCTTAAAGA CCCACAGACA CTGGAAATGA CTTttcccct atgtacataa agagggacct
 accaagaggg aaaatggttt tttccttctc ctctgtgtta gttcattacc tgttcagaaa
 agaagagcaa gaatctaaac acacctgaac acacccactt acaagatagt atctgtctct
 taggctcagt cagtttccaa agacaaccat tgacaagtta atctctgctc cccatccact
 catatccact cattctcctt agtaatcatt gattgcccct caacggaatg atctacattc
 cctatccctc cctcccctct ggaataagag catataacat ctgggcctcc ctaggatagg
 gggtcatctc tcattgagat gggggttctc cctcccgtgc atgtgaatca attttcatgg
 cttttctcca attaatctgc
 M
 gtttgtcagt taagttttca gtgaaacttc agagggcaaa ggggaagttt tcccttggcc
 cctgcaAGGG AAAGAAATGA GCCTTCTCTT CTCCCATACT CCTTACTTAC TCAGAACTGT
 GCTCTAGCAA ATGCTCAGCA CTATTTTTGT TAAAAGACTT GTCCAGAGCT GGGGCCTAGG
 ACCTAAGTCT CCAATTCTCA TTCTCCATCA TTCTAGAAGT TAGAATACTT ATGTCCTAAT
 TCTCTAATAG CTTCTATGTT TAGCCA

  Submitted Frequency for ss19829354 back to top
There is no frequency submission for ss19829354.


  dbSNP summary of Genotypes for ss19829354 back to top
No sufficient data to compute Hardy-weinberg probability for ss19829354.


  Submitted individual genotype for ss19829354 back to top
There is no individual genotype data for ss19829354.